Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare
P Suravajhala, LJA Kogelman… - Genetics Selection …, 2016 - Springer
In the past years, there has been a remarkable development of high-throughput omics (HTO)
technologies such as genomics, epigenomics, transcriptomics, proteomics and …
technologies such as genomics, epigenomics, transcriptomics, proteomics and …
[PDF][PDF] Bioinformatics: an overview and its applications
Technological advancements in recent years have promoted a marked progress in
understanding the genetic basis of phenotypes. In line with these advances, genomics has …
understanding the genetic basis of phenotypes. In line with these advances, genomics has …
Gene co-expression analysis for functional classification and gene–disease predictions
S Van Dam, U Vosa, A van der Graaf… - Briefings in …, 2018 - academic.oup.com
Gene co-expression networks can be used to associate genes of unknown function with
biological processes, to prioritize candidate disease genes or to discern transcriptional …
biological processes, to prioritize candidate disease genes or to discern transcriptional …
Transcriptome analysis of an apple (Malus × domestica) yellow fruit somatic mutation identifies a gene network module highly associated with anthocyanin and …
I El-Sharkawy, D Liang, K Xu - Journal of experimental botany, 2015 - academic.oup.com
Using RNA-seq, this study analysed an apple (Malus× domestica) anthocyanin-deficient
yellow-skin somatic mutant 'Blondee'(BLO) and its red-skin parent 'Kidd's D-8'(KID), the …
yellow-skin somatic mutant 'Blondee'(BLO) and its red-skin parent 'Kidd's D-8'(KID), the …
Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle
Background The selection of beef cattle for feed efficiency (FE) traits is very important not
only for productive and economic efficiency but also for reduced environmental impact of …
only for productive and economic efficiency but also for reduced environmental impact of …
Comparison of methods for differential co-expression analysis for disease biomarker prediction
In the recent past, a number of methods have been developed for analysis of biological data.
Among these methods, gene co-expression networks have the ability to mine functionally …
Among these methods, gene co-expression networks have the ability to mine functionally …
RNA-Seq transcriptomics and pathway analyses reveal potential regulatory genes and molecular mechanisms in high-and low-residual feed intake in Nordic dairy …
MS Salleh, G Mazzoni, JK Höglund, DW Olijhoek… - BMC genomics, 2017 - Springer
Background The selective breeding of cattle with high-feed efficiencies (FE) is an important
goal of beef and dairy cattle producers. Global gene expression patterns in relevant tissues …
goal of beef and dairy cattle producers. Global gene expression patterns in relevant tissues …
Fourth report on chicken genes and chromosomes 2022
The chicken continues to hold its position as a leading model organism within many areas of
research, as well as being a major source of protein for human consumption. The First …
research, as well as being a major source of protein for human consumption. The First …
Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection
Background Previously, we identified a major quantitative trait locus (QTL) for host response
to Porcine Respiratory and Reproductive Syndrome virus (PRRSV) infection in high linkage …
to Porcine Respiratory and Reproductive Syndrome virus (PRRSV) infection in high linkage …
Genetic architecture and selection of Anhui autochthonous pig population revealed by whole genome resequencing
W Zhang, X Li, Y Jiang, M Zhou, L Liu, S Su, C Xu… - Frontiers in …, 2022 - frontiersin.org
The genetic resources among pigs in Anhui Province are diverse, but their value and
potential have yet to be discovered. To illustrate the genetic diversity and population …
potential have yet to be discovered. To illustrate the genetic diversity and population …