ScanNet: an interpretable geometric deep learning model for structure-based protein binding site prediction
Predicting the functional sites of a protein from its structure, such as the binding sites of small
molecules, other proteins or antibodies, sheds light on its function in vivo. Currently, two …
molecules, other proteins or antibodies, sheds light on its function in vivo. Currently, two …
Simple mechanisms for the evolution of protein complexity
Proteins are tiny models of biological complexity: specific interactions among their many
amino acids cause proteins to fold into elaborate structures, assemble with other proteins …
amino acids cause proteins to fold into elaborate structures, assemble with other proteins …
[HTML][HTML] How gene duplication diversifies the landscape of protein oligomeric state and function
Oligomeric proteins are central to cellular life and the duplication and divergence of their
genes is a key driver of evolutionary innovations. The duplication of a gene coding for an …
genes is a key driver of evolutionary innovations. The duplication of a gene coding for an …
[HTML][HTML] An atlas of protein homo-oligomerization across domains of life
Protein structures are essential to understanding cellular processes in molecular detail.
While advances in artificial intelligence revealed the tertiary structure of proteins at scale …
While advances in artificial intelligence revealed the tertiary structure of proteins at scale …
Structural plasticity enables evolution and innovation of RuBisCO assemblies
Oligomerization is a core structural feature that defines the form and function of many
proteins. Most proteins form molecular complexes; however, there remains a dearth of …
proteins. Most proteins form molecular complexes; however, there remains a dearth of …
Manipulating interfaces of electrocatalysts down to atomic scales: fundamentals, strategies, and electrocatalytic applications
Raising electrocatalysis by rationally devising catalysts plays a core role in almost all
renewable energy conversion and storage systems. The principal catalytic properties can be …
renewable energy conversion and storage systems. The principal catalytic properties can be …
A complete rule set for designing symmetry combination materials from protein molecules
Diverse efforts in protein engineering are beginning to produce novel kinds of symmetric self-
assembling architectures, from protein cages to extended two-dimensional (2D) and three …
assembling architectures, from protein cages to extended two-dimensional (2D) and three …
Protein quaternary structures in solution are a mixture of multiple forms
Over half the proteins in the E. coli cytoplasm form homo or hetero-oligomeric structures.
Experimentally determined structures are often considered in determining a protein's …
Experimentally determined structures are often considered in determining a protein's …
Frequent transitions in self-assembly across the evolution of a central metabolic enzyme
FL Sendker, T Schlotthauer, CN Mais, YK Lo… - Nature …, 2024 - nature.com
Many enzymes assemble into homomeric protein complexes comprising multiple copies of
one protein. Because structural form is usually assumed to follow function in biochemistry …
one protein. Because structural form is usually assumed to follow function in biochemistry …
Automated evaluation of quaternary structures from protein crystals
A correct assessment of the quaternary structure of proteins is a fundamental prerequisite to
understanding their function, physico-chemical properties and mode of interaction with other …
understanding their function, physico-chemical properties and mode of interaction with other …