Approaching the catalytic mechanism of protein lysine methyltransferases by biochemical and simulation techniques

P Schnee, J Pleiss, A Jeltsch - Critical Reviews in Biochemistry and …, 2024 - Taylor & Francis
Protein lysine methyltransferases (PKMTs) transfer up to three methyl groups to the side
chains of lysine residues in proteins and fulfill important regulatory functions by controlling …

[HTML][HTML] Allostery frustrates the experimentalist

S Gianni, P Jemth - Journal of Molecular Biology, 2023 - Elsevier
Proteins interact with other proteins, with nucleic acids, lipids, carbohydrates and various
small molecules in the living cell. These interactions have been quantified and structurally …

Intrinsic structural dynamics dictate enzymatic activity and inhibition

VK Shukla, L Siemons… - Proceedings of the …, 2023 - National Acad Sciences
Enzymes are known to sample various conformations, many of which are critical for their
biological function. However, structural characterizations of enzymes predominantly focus …

Bioactives from medicinal herb against bedaquiline resistant tuberculosis: removing the dark clouds from the horizon

R Singh, S Manna, H Nandanwar, R Purohit - Microbes and Infection, 2024 - Elsevier
Tuberculosis is a contagious bacterial ailment that primarily affects the lungs and is brought
on by the bacterium Mycobacterium tuberculosis (MTB). An antimycobacterial medication …

The Rigid Core and Flexible Surface of Amyloid Fibrils Probed by Magic‐Angle‐Spinning NMR Spectroscopy of Aromatic Residues

LM Becker, M Berbon, A Vallet… - Angewandte Chemie …, 2023 - Wiley Online Library
Aromatic side chains are important reporters of the plasticity of proteins, and often form
important contacts in protein–protein interactions. We studied aromatic residues in the two …

NMR studies of aromatic ring flips to probe conformational fluctuations in proteins

M Akke, U Weininger - The Journal of Physical Chemistry B, 2023 - ACS Publications
Aromatic residues form a significant part of the protein core, where they make tight
interactions with multiple surrounding side chains. Despite the dense packing of internal …

Deciphering evolutionary trajectories of lactate dehydrogenases provides new insights into allostery

AY Robin, C Brochier-Armanet… - Molecular Biology …, 2023 - academic.oup.com
Abstract Lactate dehydrogenase (LDH, EC. 1.1. 127) is an important enzyme engaged in the
anaerobic metabolism of cells, catalyzing the conversion of pyruvate to lactate and NADH to …

Global insights into the fine tuning of human A2AAR conformational dynamics in a ternary complex with an engineered G protein viewed by NMR

G Ferré, K Anazia, LO Silva, N Thakur, AP Ray… - Cell reports, 2022 - cell.com
G protein-coupled receptor (GPCR) conformational plasticity enables formation of ternary
signaling complexes with intracellular proteins in response to binding extracellular ligands …

Existence of Singularities in NMR Relaxation Dispersion Profiles: Implications for Hidden Dynamics

FA Chao, RA Byrd - Journal of the American Chemical Society, 2024 - ACS Publications
It is common for NMR relaxation dispersion experiments to suggest an absence of dynamics
despite anecdotal indications of conformational dynamics. We explore the potential …

Specific isotopic labelling and reverse labelling for protein NMR spectroscopy: using metabolic precursors in sample preparation

B Rowlinson, E Crublet, R Kerfah… - Biochemical Society …, 2022 - portlandpress.com
The study of protein structure, dynamics and function by NMR spectroscopy commonly
requires samples that have been enriched ('labelled') with the stable isotopes 13C and/or …