Polyploidy, the nucleotype, and novelty: the impact of genome doubling on the biology of the cell
Polyploidy is a key mechanism of genome evolution and speciation, particularly in plants.
Many aspects of polyploidy have been elucidated with the tools that have become available …
Many aspects of polyploidy have been elucidated with the tools that have become available …
Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing
Despite longstanding appreciation of gene expression heterogeneity in isogenic bacterial
populations, affordable and scalable technologies for studying single bacterial cells have …
populations, affordable and scalable technologies for studying single bacterial cells have …
The application of single‐cell RNA sequencing in vaccinology
Single‐cell RNA sequencing allows highly detailed profiling of cellular immune responses
from limited‐volume samples, advancing prospects of a new era of systems immunology …
from limited‐volume samples, advancing prospects of a new era of systems immunology …
m6A RNA modification regulates innate lymphoid cell responses in a lineage-specific manner
Innate lymphoid cells (ILCs) can quickly switch from a quiescent state to an active state and
rapidly produce effector molecules that provide critical early immune protection. How the …
rapidly produce effector molecules that provide critical early immune protection. How the …
Analytical distributions for detailed models of stochastic gene expression in eukaryotic cells
The stochasticity of gene expression presents significant challenges to the modeling of
genetic networks. A two-state model describing promoter switching, transcription, and …
genetic networks. A two-state model describing promoter switching, transcription, and …
Single-nucleus RNA-seq2 reveals functional crosstalk between liver zonation and ploidy
ML Richter, IK Deligiannis, K Yin, A Danese… - Nature …, 2021 - nature.com
Single-cell RNA-seq reveals the role of pathogenic cell populations in development and
progression of chronic diseases. In order to expand our knowledge on cellular …
progression of chronic diseases. In order to expand our knowledge on cellular …
Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis
Intracellular reaction rates depend on concentrations and hence their levels are often
regulated. However classical models of stochastic gene expression lack a cell size …
regulated. However classical models of stochastic gene expression lack a cell size …
Cellular heterogeneity in pressure and growth emerges from tissue topology and geometry
Cell-to-cell heterogeneity prevails in many systems, as exemplified by cell growth, although
the origin and function of such heterogeneity are often unclear. In plants, growth is physically …
the origin and function of such heterogeneity are often unclear. In plants, growth is physically …
Coordination of gene expression noise with cell size: analytical results for agent-based models of growing cell populations
P Thomas, V Shahrezaei - Journal of the Royal Society …, 2021 - royalsocietypublishing.org
The chemical master equation and the Gillespie algorithm are widely used to model the
reaction kinetics inside living cells. It is thereby assumed that cell growth and division can be …
reaction kinetics inside living cells. It is thereby assumed that cell growth and division can be …
Noise suppression in stochastic genetic circuits using pid controllers
Inside individual cells, protein population counts are subject to molecular noise due to low
copy numbers and the inherent probabilistic nature of biochemical processes. We …
copy numbers and the inherent probabilistic nature of biochemical processes. We …