Tracking cancer evolution through the disease course

C Bailey, JRM Black, JL Reading, K Litchfield… - Cancer discovery, 2021 - AACR
During cancer evolution, constituent tumor cells compete under dynamic selection
pressures. Phenotypic variation can be observed as intratumor heterogeneity, which is …

Lung cancer epigenetics: from knowledge to applications

M Duruisseaux, M Esteller - Seminars in cancer biology, 2018 - Elsevier
Lung cancer is the leading cause of cancer-related mortality worldwide. Advances in our
understanding of the genomics of lung cancer have led to substantial progress in the …

The protein expression profile of ACE2 in human tissues

F Hikmet, L Méar, Å Edvinsson, P Micke… - Molecular systems …, 2020 - embopress.org
The novel SARS‐coronavirus 2 (SARS‐CoV‐2) poses a global challenge on healthcare and
society. For understanding the susceptibility for SARS‐CoV‐2 infection, the cell type‐specific …

Phenotype molding of stromal cells in the lung tumor microenvironment

D Lambrechts, E Wauters, B Boeckx, S Aibar… - Nature medicine, 2018 - nature.com
Cancer cells are embedded in the tumor microenvironment (TME), a complex ecosystem of
stromal cells. Here, we present a 52,698-cell catalog of the TME transcriptome in human …

A pathology atlas of the human cancer transcriptome

M Uhlen, C Zhang, S Lee, E Sjöstedt, L Fagerberg… - Science, 2017 - science.org
INTRODUCTION Cancer is a leading cause of death worldwide, and there is great need to
define the molecular mechanisms driving the development and progression of individual …

Molecular signature of subtypes of non-small-cell lung cancer by large-scale transcriptional profiling: identification of key modules and genes by weighted gene co …

M Niemira, F Collin, A Szalkowska, A Bielska… - Cancers, 2019 - mdpi.com
Non-small-cell lung cancer (NSCLC) represents a heterogeneous group of malignancies
consisting essentially of adenocarcinoma (ADC) and squamous cell carcinoma (SCC) …

Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues

JG Abelin, EJ Bergstrom, KD Rivera, HB Taylor… - Nature …, 2023 - nature.com
Serial multi-omic analysis of proteome, phosphoproteome, and acetylome provides insights
into changes in protein expression, cell signaling, cross-talk and epigenetic pathways …

[HTML][HTML] PD-L1 immunohistochemistry in clinical diagnostics of lung cancer: inter-pathologist variability is higher than assay variability

H Brunnström, A Johansson, S Westbom-Fremer… - Modern Pathology, 2017 - Elsevier
Assessment of programmed cell death ligand 1 (PD-L1) immunohistochemical staining is
used for decision on treatment with programmed cell death 1 and PD-L1 checkpoint …

Multispectral imaging for quantitative and compartment‐specific immune infiltrates reveals distinct immune profiles that classify lung cancer patients

A Mezheyeuski, CH Bergsland… - The Journal of …, 2018 - Wiley Online Library
Semiquantitative assessment of immune markers by immunohistochemistry (IHC) has
significant limitations for describing the diversity of the immune response in cancer …

CD44 promotes PD-L1 expression and its tumor-intrinsic function in breast and lung cancers

T Kong, R Ahn, K Yang, X Zhu, Z Fu, G Morin… - Cancer research, 2020 - AACR
Abstract The PD-L1 (CD274) immune-checkpoint ligand is often upregulated in cancers to
inhibit T cells and elicit immunosuppression. Independent of this activity, PD-L1 has recently …