Protein X-ray crystallography and drug discovery

L Maveyraud, L Mourey - Molecules, 2020 - mdpi.com
With the advent of structural biology in the drug discovery process, medicinal chemists
gained the opportunity to use detailed structural information in order to progress screening …

A medicinal chemist's guide to molecular interactions

C Bissantz, B Kuhn, M Stahl - Journal of medicinal chemistry, 2010 - ACS Publications
Molecular recognition in biological systems relies on the existence of specific attractive
interactions between two partner molecules. Structure-based drug design seeks to identify …

Lead-and drug-like compounds: the rule-of-five revolution

CA Lipinski - Drug discovery today: Technologies, 2004 - Elsevier
Citations in CAS SciFinder to the rule-of-five (RO5) publication will exceed 1000 by year-end
2004. Trends in the RO5 literature explosion that can be discerned are the further definitions …

[PDF][PDF] electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation

NW Moriarty, RW Grosse-Kunstleve… - … Section D: Biological …, 2009 - journals.iucr.org
The electronic Ligand Builder and Optimization Workbench (eLBOW) is a program module
of the PHENIX suite of computational crystallographic software. It is designed to be a flexible …

[PDF][PDF] PRODRG: a tool for high-throughput crystallography of protein–ligand complexes

AW Schüttelkopf, DMF Van Aalten - Acta Crystallographica Section …, 2004 - journals.iucr.org
The small-molecule topology generator PRODRG is described, which takes input from
existing coordinates or various two-dimensional formats and automatically generates …

The role of natural product chemistry in drug discovery

MS Butler - Journal of natural products, 2004 - ACS Publications
Although traditionally natural products have played an important role in drug discovery, in
the past few years most Big Pharma companies have either terminated or considerably …

Binding mechanisms in supramolecular complexes

HJ Schneider - Angewandte Chemie International Edition, 2009 - Wiley Online Library
Forces to reckon with: Supramolecular complexes, such as the one shown, are normally
based on a combination of different interactions such as ion pairing, hydrogen bonds, and …

Universal QM/MM approaches for general nanoscale applications

KS Csizi, M Reiher - Wiley Interdisciplinary Reviews …, 2023 - Wiley Online Library
Quantum mechanics/molecular mechanics (QM/MM) hybrid models allow one to address
chemical phenomena in complex molecular environments. Whereas this modeling approach …

Binding affinities of host–guest, protein–ligand, and protein–transition‐state complexes

KN Houk, AG Leach, SP Kim… - Angewandte Chemie …, 2003 - Wiley Online Library
The affinities of hosts—ranging from small synthetic cavitands to large proteins—for organic
molecules are well documented. The average association constants for the binding of …

Natural products to drugs: natural product derived compounds in clinical trials

MS Butler - Natural product reports, 2005 - pubs.rsc.org
Covering: 31st December 2004Natural product and natural product-derived compounds that
are being evaluated in clinical trials or in registration (current 31 December 2004) have …