Applications of single-cell sequencing in cancer research: progress and perspectives

Y Lei, R Tang, J Xu, W Wang, B Zhang, J Liu… - Journal of hematology & …, 2021 - Springer
Single-cell sequencing, including genomics, transcriptomics, epigenomics, proteomics and
metabolomics sequencing, is a powerful tool to decipher the cellular and molecular …

Application of artificial intelligence technology in oncology: Towards the establishment of precision medicine

R Hamamoto, K Suvarna, M Yamada, K Kobayashi… - Cancers, 2020 - mdpi.com
Simple Summary Artificial intelligence (AI) technology has been advancing rapidly in recent
years and is being implemented in society. The medical field is no exception, and the clinical …

Single-cell analyses highlight the proinflammatory contribution of C1q-high monocytes to Behçet's disease

W Zheng, X Wang, J Liu, X Yu, L Li… - Proceedings of the …, 2022 - National Acad Sciences
Behçet's disease (BD) is a chronic vasculitis characterized by systemic immune aberrations.
However, a comprehensive understanding of immune disturbances in BD and how they …

Chromatin accessibility profiling methods

L Minnoye, GK Marinov, T Krausgruber, L Pan… - Nature Reviews …, 2021 - nature.com
Chromatin accessibility, or the physical access to chromatinized DNA, is a widely studied
characteristic of the eukaryotic genome. As active regulatory DNA elements are generally …

Persistence of mature dendritic cells, TH2A, and Tc2 cells characterize clinically resolved atopic dermatitis under IL-4Rα blockade

C Bangert, K Rindler, T Krausgruber, N Alkon… - Science …, 2021 - science.org
Therapeutic options for autoimmune diseases typically consist of broad and targeted
immunosuppressive agents. However, sustained clinical benefit is rarely achieved, as the …

[HTML][HTML] Single-cell analysis reveals innate lymphoid cell lineage infidelity in atopic dermatitis

N Alkon, WM Bauer, T Krausgruber, I Goh… - Journal of Allergy and …, 2022 - Elsevier
Background Although ample knowledge exists about phenotype and function of cutaneous T
lymphocytes, much less is known about the lymphocytic components of the skin's innate …

[HTML][HTML] Immunogenomic landscape of hematological malignancies

O Dufva, P Pölönen, O Brück, MAI Keränen, J Klievink… - Cancer Cell, 2020 - cell.com
Understanding factors that shape the immune landscape across hematological
malignancies is essential for immunotherapy development. We integrated over 8,000 …

Single-cell characterization of leukemic and non-leukemic immune repertoires in CD8+ T-cell large granular lymphocytic leukemia

J Huuhtanen, D Bhattacharya, T Lönnberg… - Nature …, 2022 - nature.com
T cell large granular lymphocytic leukemia (T-LGLL) is a rare lymphoproliferative disorder of
mature, clonally expanded T cells, where somatic-activating STAT3 mutations are common …

Single-cell analysis of immune recognition in chronic myeloid leukemia patients following tyrosine kinase inhibitor discontinuation

J Huuhtanen, S Adnan-Awad, J Theodoropoulos… - Leukemia, 2024 - nature.com
Immunological control of residual leukemia cells is thought to occur in patients with chronic
myeloid leukemia (CML) that maintain treatment-free remission (TFR) following tyrosine …

Trends and potential of machine learning and deep learning in drug study at single-cell level

R Qi, Q Zou - Research, 2023 - spj.science.org
Cancer treatments always face challenging problems, particularly drug resistance due to
tumor cell heterogeneity. The existing datasets include the relationship between gene …