Shaping bacterial gene expression by physiological and proteome allocation constraints
M Scott, T Hwa - Nature Reviews Microbiology, 2023 - nature.com
Networks of molecular regulators are often the primary objects of focus in the study of gene
regulation, with the machinery of protein synthesis tacitly relegated to the background …
regulation, with the machinery of protein synthesis tacitly relegated to the background …
Root of the tree: the significance, evolution, and origins of the ribosome
The ribosome is an ancient molecular fossil that provides a telescope to the origins of life.
Made from RNA and protein, the ribosome translates mRNA to coded protein in all living …
Made from RNA and protein, the ribosome translates mRNA to coded protein in all living …
Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction
Enzyme turnover numbers (k cat) are key to understanding cellular metabolism, proteome
allocation and physiological diversity, but experimentally measured k cat data are sparse …
allocation and physiological diversity, but experimentally measured k cat data are sparse …
The bidirectional relationship between metabolism and cell cycle control
FF Diehl, KM Sapp, MG Vander Heiden - Trends in Cell Biology, 2024 - cell.com
The relationship between metabolism and cell cycle progression is complex and
bidirectional. Cells must rewire metabolism to meet changing biosynthetic demands across …
bidirectional. Cells must rewire metabolism to meet changing biosynthetic demands across …
Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies
IE Elsemman, A Rodriguez Prado, P Grigaitis… - Nature …, 2022 - nature.com
When conditions change, unicellular organisms rewire their metabolism to sustain cell
maintenance and cellular growth. Such rewiring may be understood as resource re …
maintenance and cellular growth. Such rewiring may be understood as resource re …
Homeostasis of protein and mRNA concentrations in growing cells
J Lin, A Amir - Nature communications, 2018 - nature.com
Many experiments show that the numbers of mRNA and protein are proportional to the cell
volume in growing cells. However, models of stochastic gene expression often assume …
volume in growing cells. However, models of stochastic gene expression often assume …
Ribosome biogenesis and the cellular energy economy
D Shore, B Albert - Current Biology, 2022 - cell.com
Cell growth relies upon the ability to produce new proteins, which requires energy and
chemical precursors, and an adequate supply of the molecular machines for protein …
chemical precursors, and an adequate supply of the molecular machines for protein …
Adaptations in metabolism and protein translation give rise to the Crabtree effect in yeast
Aerobic fermentation, also referred to as the Crabtree effect in yeast, is a well-studied
phenomenon that allows many eukaryal cells to attain higher growth rates at high glucose …
phenomenon that allows many eukaryal cells to attain higher growth rates at high glucose …
Proteotoxicity from aberrant ribosome biogenesis compromises cell fitness
To achieve maximal growth, cells must manage a massive economy of ribosomal proteins (r-
proteins) and RNAs (rRNAs) to produce thousands of ribosomes every minute. Although …
proteins) and RNAs (rRNAs) to produce thousands of ribosomes every minute. Although …
Escherichiacoli translation strategies differ across carbon, nitrogen and phosphorus limitation conditions
For cells to grow faster they must increase their protein production rate. Microorganisms
have traditionally been thought to accomplish this increase by producing more ribosomes to …
have traditionally been thought to accomplish this increase by producing more ribosomes to …