[HTML][HTML] The cohesin release factor WAPL restricts chromatin loop extension

JHI Haarhuis, RH van der Weide, VA Blomen… - Cell, 2017 - cell.com
The spatial organization of chromosomes influences many nuclear processes including
gene expression. The cohesin complex shapes the 3D genome by looping together CTCF …

[HTML][HTML] The Rosa genome provides new insights into the domestication of modern roses

O Raymond, J Gouzy, J Just, H Badouin… - Nature …, 2018 - nature.com
Roses have high cultural and economic importance as ornamental plants and in the
perfume industry. We report the rose whole-genome sequencing and assembly and …

[HTML][HTML] The PP2A-Integrator-CDK9 axis fine-tunes transcription and can be targeted therapeutically in cancer

SJ Vervoort, SA Welsh, JR Devlin, E Barbieri… - Cell, 2021 - cell.com
Gene expression by RNA polymerase II (RNAPII) is tightly controlled by cyclin-dependent
kinases (CDKs) at discrete checkpoints during the transcription cycle. The pausing …

Activation and repression by oncogenic MYC shape tumour-specific gene expression profiles

S Walz, F Lorenzin, J Morton, KE Wiese, B Von Eyss… - Nature, 2014 - nature.com
In mammalian cells, the MYC oncoprotein binds to thousands of promoters,,,. During
mitogenic stimulation of primary lymphocytes, MYC promotes an increase in the expression …

ngs. plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

L Shen, N Shao, X Liu, E Nestler - BMC genomics, 2014 - Springer
Background Understanding the relationship between the millions of functional DNA
elements and their protein regulators, and how they work in conjunction to manifest diverse …

Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice

RC Adam, H Yang, S Rockowitz, SB Larsen… - Nature, 2015 - nature.com
Adult stem cells occur in niches that balance self-renewal with lineage selection and
progression during tissue homeostasis. Following injury, culture or transplantation, stem …

CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention

EM Pugacheva, N Kubo, D Loukinov… - Proceedings of the …, 2020 - National Acad Sciences
The DNA-binding protein CCCTC-binding factor (CTCF) and the cohesin complex function
together to shape chromatin architecture in mammalian cells, but the molecular details of …

H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem …

K Karmodiya, AR Krebs, M Oulad-Abdelghani… - BMC genomics, 2012 - Springer
Background Transcription regulation in pluripotent embryonic stem (ES) cells is a complex
process that involves multitude of regulatory layers, one of which is post-translational …

[HTML][HTML] A validated regulatory network for Th17 cell specification

M Ciofani, A Madar, C Galan, ML Sellars, K Mace… - Cell, 2012 - cell.com
Th17 cells have critical roles in mucosal defense and are major contributors to inflammatory
disease. Their differentiation requires the nuclear hormone receptor RORγt working with …

Drug-induced histone eviction from open chromatin contributes to the chemotherapeutic effects of doxorubicin

B Pang, X Qiao, L Janssen, A Velds, T Groothuis… - Nature …, 2013 - nature.com
DNA topoisomerase II inhibitors are a major class of cancer chemotherapeutics, which are
thought to eliminate cancer cells by inducing DNA double-strand breaks. Here we identify a …