[HTML][HTML] The cohesin release factor WAPL restricts chromatin loop extension
JHI Haarhuis, RH van der Weide, VA Blomen… - Cell, 2017 - cell.com
The spatial organization of chromosomes influences many nuclear processes including
gene expression. The cohesin complex shapes the 3D genome by looping together CTCF …
gene expression. The cohesin complex shapes the 3D genome by looping together CTCF …
[HTML][HTML] The Rosa genome provides new insights into the domestication of modern roses
Roses have high cultural and economic importance as ornamental plants and in the
perfume industry. We report the rose whole-genome sequencing and assembly and …
perfume industry. We report the rose whole-genome sequencing and assembly and …
[HTML][HTML] The PP2A-Integrator-CDK9 axis fine-tunes transcription and can be targeted therapeutically in cancer
SJ Vervoort, SA Welsh, JR Devlin, E Barbieri… - Cell, 2021 - cell.com
Gene expression by RNA polymerase II (RNAPII) is tightly controlled by cyclin-dependent
kinases (CDKs) at discrete checkpoints during the transcription cycle. The pausing …
kinases (CDKs) at discrete checkpoints during the transcription cycle. The pausing …
Activation and repression by oncogenic MYC shape tumour-specific gene expression profiles
S Walz, F Lorenzin, J Morton, KE Wiese, B Von Eyss… - Nature, 2014 - nature.com
In mammalian cells, the MYC oncoprotein binds to thousands of promoters,,,. During
mitogenic stimulation of primary lymphocytes, MYC promotes an increase in the expression …
mitogenic stimulation of primary lymphocytes, MYC promotes an increase in the expression …
ngs. plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
Background Understanding the relationship between the millions of functional DNA
elements and their protein regulators, and how they work in conjunction to manifest diverse …
elements and their protein regulators, and how they work in conjunction to manifest diverse …
Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice
Adult stem cells occur in niches that balance self-renewal with lineage selection and
progression during tissue homeostasis. Following injury, culture or transplantation, stem …
progression during tissue homeostasis. Following injury, culture or transplantation, stem …
CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention
EM Pugacheva, N Kubo, D Loukinov… - Proceedings of the …, 2020 - National Acad Sciences
The DNA-binding protein CCCTC-binding factor (CTCF) and the cohesin complex function
together to shape chromatin architecture in mammalian cells, but the molecular details of …
together to shape chromatin architecture in mammalian cells, but the molecular details of …
H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem …
K Karmodiya, AR Krebs, M Oulad-Abdelghani… - BMC genomics, 2012 - Springer
Background Transcription regulation in pluripotent embryonic stem (ES) cells is a complex
process that involves multitude of regulatory layers, one of which is post-translational …
process that involves multitude of regulatory layers, one of which is post-translational …
[HTML][HTML] A validated regulatory network for Th17 cell specification
Th17 cells have critical roles in mucosal defense and are major contributors to inflammatory
disease. Their differentiation requires the nuclear hormone receptor RORγt working with …
disease. Their differentiation requires the nuclear hormone receptor RORγt working with …
Drug-induced histone eviction from open chromatin contributes to the chemotherapeutic effects of doxorubicin
DNA topoisomerase II inhibitors are a major class of cancer chemotherapeutics, which are
thought to eliminate cancer cells by inducing DNA double-strand breaks. Here we identify a …
thought to eliminate cancer cells by inducing DNA double-strand breaks. Here we identify a …