DNA base damage recognition and removal: new twists and grooves

JL Huffman, O Sundheim, JA Tainer - Mutation Research/Fundamental and …, 2005 - Elsevier
The discoveries of nucleotide excision repair and transcription-coupled repair led by Phil
Hanawalt and a few colleagues sparked a dramatic evolution in our understanding of DNA …

House cleaning, a part of good housekeeping

MY Galperin, OV Moroz, KS Wilson… - Molecular …, 2006 - Wiley Online Library
Cellular metabolism constantly generates by‐products that are wasteful or even harmful.
Such compounds are excreted from the cell or are removed through hydrolysis to normal …

[PDF][PDF] MrBUMP: an automated pipeline for molecular replacement

RM Keegan, MD Winn - Acta Crystallographica Section D …, 2008 - journals.iucr.org
A novel automation pipeline for macromolecular structure solution by molecular replacement
is described. There is a special emphasis on the discovery and preparation of a large …

Deoxyuridine triphosphate nucleotidohydrolase as a potential antiparasitic drug target

C Nguyen, G Kasinathan, I Leal-Cortijo… - Journal of medicinal …, 2005 - ACS Publications
This paper describes a structure− activity study to identify novel, small-molecule inhibitors of
the enzyme deoxyuridine 5 '-triphosphate nucleotidohydrolase (dUTPase) from parasitic …

Pathways controlling dNTP pools to maintain genome stability

SG Rudd, NCK Valerie, T Helleday - DNA repair, 2016 - Elsevier
Artificially modified nucleotides, in the form of nucleoside analogues, are widely used in the
treatment of cancers and various other diseases, and have become important tools in the …

Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-α NTP pyrophosphohydrolases with potential “house-cleaning” functions

OV Moroz, AG Murzin, KS Makarova, EV Koonin… - Journal of molecular …, 2005 - Elsevier
Structure-guided analysis of the new dimeric dUTPase family revealed its sequence
relationship to the phage T4 dCTPase, phosphoribosyl-ATP pyrophosphatase HisE, NTP …

Structural definition of pseudorabies virus dUTPase reveals a novel folding dimer in the herpesvirus family

J Li, S Ma, R Yang, J Xu, Y Wang, S Ye - International Journal of Biological …, 2024 - Elsevier
The pseudorabies virus (PRV) causes severe and fatal acute respiratory disease in pigs.
During PRV proliferation, the enzyme deoxyuridine 5′-triphosphate nucleotide hydrolase …

Crystal structure of African swine fever virus dUTPase reveals a potential drug target

C Li, Y Chai, H Song, C Weng, J Qi, Y Sun, GF Gao - MBio, 2019 - Am Soc Microbiol
ABSTRACT E165R, a highly specific dUTP nucleotidohydrolase (dUTPase) encoded by the
African swine fever virus (ASFV) genome, is required for productive replication of ASFV in …

Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA

D Czernecki, F Bonhomme, PA Kaminski… - Nature …, 2021 - nature.com
Cyanophage S-2L is known to profoundly alter the biophysical properties of its DNA by
replacing all adenines (A) with 2-aminoadenines (Z), which still pair with thymines but with a …

Preventive DNA repair by sanitizing the cellular (deoxy) nucleoside triphosphate pool

GN Nagy, I Leveles, BG Vértessy - The FEBS journal, 2014 - Wiley Online Library
The occurrence of modified bases in DNA is attributed to some major factors: incorporation
of altered nucleotide building blocks and chemical reactions or radiation effects on bases …