Advances in hydrogen/deuterium exchange mass spectrometry and the pursuit of challenging biological systems

EI James, TA Murphree, C Vorauer, JR Engen… - Chemical …, 2021 - ACS Publications
Solution-phase hydrogen/deuterium exchange (HDX) coupled to mass spectrometry (MS) is
a widespread tool for structural analysis across academia and the biopharmaceutical …

Developments in hydrogen/deuterium exchange mass spectrometry

JR Engen, T Botzanowski, D Peterle… - Analytical …, 2020 - ACS Publications
Chemistry” on HDX MS. 1 That review covered HDX MS applications from January 2012
through June 2014 and described the publications in terms of sector, geography, and topic …

An adaptive biomolecular condensation response is conserved across environmentally divergent species

S Keyport Kik, D Christopher, H Glauninger… - Nature …, 2024 - nature.com
Cells must sense and respond to sudden maladaptive environmental changes—stresses—
to survive and thrive. Across eukaryotes, stresses such as heat shock trigger conserved …

Intrinsically disordered domain of transcription factor TCF-1 is required for T cell developmental fidelity

N Goldman, A Chandra, I Johnson, MA Sullivan… - Nature …, 2023 - nature.com
In development, pioneer transcription factors access silent chromatin to reveal lineage-
specific gene programs. The structured DNA-binding domains of pioneer factors have been …

HX and me: Understanding Allostery, folding, and protein machines

SW Englander - Annual Review of Biophysics, 2023 - annualreviews.org
My accidental encounter with protein hydrogen exchange (HX) at its very beginning and its
continued development through my scientific career have led us to a series of advances in …

Research advances in hydrogen–deuterium exchange mass spectrometry for protein epitope mapping

H Sun, L Ma, L Wang, P Xiao, H Li, M Zhou… - Analytical and …, 2021 - Springer
With the development of biomedical technology, epitope mapping of proteins has become
critical for developing and evaluating new protein drugs. The application of hydrogen …

Conformational plasticity of RAS Q61 family of neoepitopes results in distinct features for targeted recognition

AC McShan, D Flores-Solis, Y Sun, SE Garfinkle… - Nature …, 2023 - nature.com
The conformational landscapes of peptide/human leucocyte antigen (pHLA) protein
complexes encompassing tumor neoantigens provide a rationale for target selection …

An arsenal of methods for the experimental characterization of intrinsically disordered proteins–how to choose and combine them?

A Schramm, C Bignon, S Brocca, R Grandori… - Archives of biochemistry …, 2019 - Elsevier
In this review, we detail the most common experimental approaches to assess and
characterize protein intrinsic structural disorder, with the notable exception of NMR and EPR …

Probing universal protein dynamics using hydrogen–deuterium exchange mass spectrometry-derived residue-level Gibbs free energy

JH Smit, S Krishnamurthy, BY Srinivasu… - Analytical …, 2021 - ACS Publications
Hydrogen–deuterium exchange mass spectrometry (HDX-MS) is a powerful technique to
monitor protein intrinsic dynamics. The technique provides high-resolution information on …

Ternary complex dissociation kinetics contribute to mutant-selective EGFR degradation

SC Rosenberg, F Shanahan, S Yamazoe… - Cell Chemical …, 2023 - cell.com
Targeted degradation of proteins by chimeric heterobifunctional degraders has emerged as
a major drug discovery paradigm. Despite the increased interest in this approach, the criteria …