Optical tweezers in single-molecule biophysics
CJ Bustamante, YR Chemla, S Liu… - Nature Reviews Methods …, 2021 - nature.com
Optical tweezers have become the method of choice in single-molecule manipulation
studies. In this Primer, we first review the physical principles of optical tweezers and the …
studies. In this Primer, we first review the physical principles of optical tweezers and the …
Noise in biology
LS Tsimring - Reports on Progress in Physics, 2014 - iopscience.iop.org
Noise permeates biology on all levels, from the most basic molecular, sub-cellular
processes to the dynamics of tissues, organs, organisms and populations. The functional …
processes to the dynamics of tissues, organs, organisms and populations. The functional …
[图书][B] Stochastic processes in cell biology
PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …
components of a living cell operate in a highly noisy environment. What are the specific …
Millisecond dynamics of RNA polymerase II translocation at atomic resolution
Transcription is a central step in gene expression, in which the DNA template is processively
read by RNA polymerase II (Pol II), synthesizing a complementary messenger RNA …
read by RNA polymerase II (Pol II), synthesizing a complementary messenger RNA …
Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism
During transcription elongation, RNA polymerase has been assumed to attain equilibrium
between pre-and post-translocated states rapidly relative to the subsequent catalysis. Under …
between pre-and post-translocated states rapidly relative to the subsequent catalysis. Under …
The mechanisms of substrate selection, catalysis, and translocation by the elongating RNA polymerase
GA Belogurov, I Artsimovitch - Journal of molecular biology, 2019 - Elsevier
Multi-subunit DNA-dependent RNA polymerases synthesize all classes of cellular RNAs,
ranging from short regulatory transcripts to gigantic messenger RNAs. RNA polymerase has …
ranging from short regulatory transcripts to gigantic messenger RNAs. RNA polymerase has …
The elemental mechanism of transcriptional pausing
J Saba, XY Chua, TV Mishanina, D Nayak… - Elife, 2019 - elifesciences.org
Transcriptional pausing underlies regulation of cellular RNA biogenesis. A consensus
pause sequence that acts on RNA polymerases (RNAPs) from bacteria to mammals halts …
pause sequence that acts on RNA polymerases (RNAPs) from bacteria to mammals halts …
An ultraprocessive, accurate reverse transcriptase encoded by a metazoan group II intron
Group II introns and non-LTR retrotransposons encode a phylogenetically related family of
highly processive reverse transcriptases (RTs) that are essential for mobility and persistence …
highly processive reverse transcriptases (RTs) that are essential for mobility and persistence …
Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases
RNA polymerase pausing represents an important mechanism of transcriptional regulation.
In this study, we use a single-molecule transcription assay to investigate the effect of …
In this study, we use a single-molecule transcription assay to investigate the effect of …
Studying genomic processes at the single-molecule level: introducing the tools and applications
To understand genomic processes such as transcription, translation or splicing, we need to
be able to study their spatial and temporal organization at the molecular level. Single …
be able to study their spatial and temporal organization at the molecular level. Single …