Computational methods for transcriptome annotation and quantification using RNA-seq
High-throughput RNA sequencing (RNA-seq) promises a comprehensive picture of the
transcriptome, allowing for the complete annotation and quantification of all genes and their …
transcriptome, allowing for the complete annotation and quantification of all genes and their …
Research on plant abiotic stress responses in the post‐genome era: past, present and future
T Hirayama, K Shinozaki - The plant journal, 2010 - Wiley Online Library
Understanding abiotic stress responses in plants is an important and challenging topic in
plant research. Physiological and molecular biological analyses have allowed us to draw a …
plant research. Physiological and molecular biological analyses have allowed us to draw a …
Designing future crops: challenges and strategies for sustainable agriculture
Z Tian, JW Wang, J Li, B Han - The Plant Journal, 2021 - Wiley Online Library
Crop production is facing unprecedented challenges. Despite the fact that the food supply
has significantly increased over the past half‐century,~ 8.9 and 14.3% people are still …
has significantly increased over the past half‐century,~ 8.9 and 14.3% people are still …
[HTML][HTML] Biofuels from algae: challenges and potential
M Hannon, J Gimpel, M Tran, B Rasala, S Mayfield - Biofuels, 2010 - ncbi.nlm.nih.gov
Algae biofuels may provide a viable alternative to fossil fuels; however, this technology must
overcome a number of hurdles before it can compete in the fuel market and be broadly …
overcome a number of hurdles before it can compete in the fuel market and be broadly …
Shade tolerance: when growing tall is not an option
Two different plant strategies exist to deal with shade: shade avoidance and shade
tolerance. All shade-exposed plants optimize photosynthesis to adapt to the decrease in …
tolerance. All shade-exposed plants optimize photosynthesis to adapt to the decrease in …
The development of Arabidopsis as a model plant
M Koornneef, D Meinke - The plant journal, 2010 - Wiley Online Library
Twenty‐five years ago, Arabidopsis thaliana emerged as the model organism of choice for
research in plant biology. A consensus was reached about the need to focus on a single …
research in plant biology. A consensus was reached about the need to focus on a single …
Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and …
The incompatible pathosystem between resistant cotton (Gossypium barbadense cv. 7124)
and Verticillium dahliae strain V991 was used to study the cotton transcriptome changes …
and Verticillium dahliae strain V991 was used to study the cotton transcriptome changes …
RNA-seq: from technology to biology
S Marguerat, J Bähler - Cellular and molecular life sciences, 2010 - Springer
Next-generation sequencing technologies are now being exploited not only to analyse static
genomes, but also dynamic transcriptomes in an approach termed RNA-seq. Although these …
genomes, but also dynamic transcriptomes in an approach termed RNA-seq. Although these …
SHOREmap: simultaneous mapping and mutation identification by deep sequencing
K Schneeberger, S Ossowski, C Lanz, T Juul… - Nature …, 2009 - nature.com
To the Editor: Traditional strategies for identification of causal mutations involve two discrete
steps: recombinant genotyping and candidate gene sequencing. To dramatically speed up …
steps: recombinant genotyping and candidate gene sequencing. To dramatically speed up …
An epigenetic view of plant cells cultured in vitro: somaclonal variation and beyond
C Miguel, L Marum - Journal of experimental botany, 2011 - academic.oup.com
Epigenetic mechanisms are highly dynamic events that modulate gene expression. As more
accurate and powerful tools for epigenetic analysis become available for application in a …
accurate and powerful tools for epigenetic analysis become available for application in a …