Determinants of genetic diversity

H Ellegren, N Galtier - Nature Reviews Genetics, 2016 - nature.com
Genetic polymorphism varies among species and within genomes, and has important
implications for the evolution and conservation of species. The determinants of this variation …

Making sense of genomic islands of differentiation in light of speciation

JBW Wolf, H Ellegren - Nature Reviews Genetics, 2017 - nature.com
As populations diverge, genetic differences accumulate across the genome. Spurred by
rapid developments in sequencing technology, genome-wide population surveys of natural …

MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization

G Meng, Y Li, C Yang, S Liu - Nucleic acids research, 2019 - academic.oup.com
Mitochondrial genome (mitogenome) plays important roles in evolutionary and ecological
studies. It becomes routine to utilize multiple genes on mitogenome or the entire …

A benchmark of gene expression tissue-specificity metrics

N Kryuchkova-Mostacci… - Briefings in …, 2017 - academic.oup.com
One of the major properties of genes is their expression pattern. Notably, genes are often
classified as tissue specific or housekeeping. This property is of interest to molecular …

Evolution and diversity of transposable elements in vertebrate genomes

CG Sotero-Caio, RN Platt, A Suh… - Genome biology and …, 2017 - academic.oup.com
Transposable elements (TEs) are selfish genetic elements that mobilize in genomes via
transposition or retrotransposition and often make up large fractions of vertebrate genomes …

How to identify sex chromosomes and their turnover

DH Palmer, TF Rogers, R Dean, AE Wright - Molecular ecology, 2019 - Wiley Online Library
Although sex is a fundamental component of eukaryotic reproduction, the genetic systems
that control sex determination are highly variable. In many organisms the presence of sex …

What have we learned from the first 500 avian genomes?

GA Bravo, CJ Schmitt… - Annual Review of Ecology …, 2021 - annualreviews.org
The increased capacity of DNA sequencing has significantly advanced our understanding of
the phylogeny of birds and the proximate and ultimate mechanisms molding their genomic …

Direct estimate of the rate of germline mutation in a bird

L Smeds, A Qvarnström, H Ellegren - Genome research, 2016 - genome.cshlp.org
The fidelity of DNA replication together with repair mechanisms ensure that the genetic
material is properly copied from one generation to another. However, on extremely rare …

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a birdofparadise

V Peona, MPK Blom, L Xu, R Burri… - Molecular ecology …, 2021 - Wiley Online Library
Genome assemblies are currently being produced at an impressive rate by consortia and
individual laboratories. The low costs and increasing efficiency of sequencing technologies …

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Q Pan, R Feron, A Yano, R Guyomard, E Jouanno… - PLoS …, 2019 - journals.plos.org
Teleost fishes, thanks to their rapid evolution of sex determination mechanisms, provide
remarkable opportunities to study the formation of sex chromosomes and the mechanisms …