Theory of protein folding: the energy landscape perspective
JN Onuchic, Z Luthey-Schulten… - Annual review of …, 1997 - annualreviews.org
▪ Abstract The energy landscape theory of protein folding is a statistical description of a
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …
protein's potential surface. It assumes that folding occurs through organizing an ensemble of …
Principles of protein folding—a perspective from simple exact models
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …
explored in computer simulations of simple exact lattice models. These models represent …
[HTML][HTML] Finding low-energy conformations of lattice protein models by quantum annealing
A Perdomo-Ortiz, N Dickson, M Drew-Brook, G Rose… - Scientific reports, 2012 - nature.com
Lattice protein folding models are a cornerstone of computational biophysics. Although
these models are a coarse grained representation, they provide useful insight into the …
these models are a coarse grained representation, they provide useful insight into the …
Navigating the folding routes
A theory of helix formation in collapsed polymers relates the measured amount of helix in the
collapsed states to the conformational entropy associated with different chain topologies …
collapsed states to the conformational entropy associated with different chain topologies …
Molten globule and protein folding
OB Ptitsyn - Advances in protein chemistry, 1995 - Elsevier
Publisher Summary This chapter describes the present state of the studies of the molten
globule state and its role in protein folding and physiological processes. Recent data on the …
globule state and its role in protein folding and physiological processes. Recent data on the …
[HTML][HTML] A theoretical method to compute sequence dependent configurational properties in charged polymers and proteins
A general formalism to compute configurational properties of proteins and other
heteropolymers with an arbitrary sequence of charges and non-uniform excluded volume …
heteropolymers with an arbitrary sequence of charges and non-uniform excluded volume …
Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes
Background Halophilic prokaryotes are adapted to thrive in extreme conditions of salinity.
Identification and analysis of distinct macromolecular characteristics of halophiles provide …
Identification and analysis of distinct macromolecular characteristics of halophiles provide …
Protein folding thermodynamics and dynamics: where physics, chemistry, and biology meet
E Shakhnovich - Chemical reviews, 2006 - ACS Publications
As was noted in our recent review, 1 the protein folding field underwent a cyclic
development. Initially, protein folding was viewed as a strictly experimental field belonging to …
development. Initially, protein folding was viewed as a strictly experimental field belonging to …
Rules of physical mathematics govern intrinsically disordered proteins
In stark contrast to foldable proteins with a unique folded state, intrinsically disordered
proteins and regions (IDPs) persist in perpetually disordered ensembles. Yet an IDP …
proteins and regions (IDPs) persist in perpetually disordered ensembles. Yet an IDP …
Protein and DNA sequence determinants of thermophilic adaptation
KB Zeldovich, IN Berezovsky… - PLoS computational …, 2007 - journals.plos.org
There have been considerable attempts in the past to relate phenotypic trait—habitat
temperature of organisms—to their genotypes, most importantly compositions of their …
temperature of organisms—to their genotypes, most importantly compositions of their …