Scaffold proteins: hubs for controlling the flow of cellular information

MC Good, JG Zalatan, WA Lim - Science, 2011 - science.org
The spatial and temporal organization of molecules within a cell is critical for coordinating
the many distinct activities carried out by the cell. In an increasing number of biological …

Eight kinetically stable but thermodynamically activated molecules that power cell metabolism

CT Walsh, BP Tu, Y Tang - Chemical reviews, 2018 - ACS Publications
Contemporary analyses of cell metabolism have called out three metabolites: ATP, NADH,
and acetyl-CoA, as sentinel molecules whose accumulation represent much of the purpose …

Enhanced activity of immobilized or chemically modified enzymes

Y Zhang, J Ge, Z Liu - AcS catalysis, 2015 - ACS Publications
Re-engineering enzymes with high activities in the given environments different from the
physiological one has been constantly pursued for application of enzymatic catalysis in …

Synthetic protein scaffolds provide modular control over metabolic flux

JE Dueber, GC Wu, GR Malmirchegini, TS Moon… - Nature …, 2009 - nature.com
Engineered metabolic pathways constructed from enzymes heterologous to the production
host often suffer from flux imbalances, as they typically lack the regulatory mechanisms …

[HTML][HTML] Mammalian pyrimidine biosynthesis: fresh insights into an ancient pathway

DR Evans, HI Guy - Journal of Biological Chemistry, 2004 - ASBMB
Pyrimidine nucleotides play a critical role in cellular metabolism serving as activated
precursors of RNA and DNA, CDP-diacylglycerol phosphoglyceride for the assembly of cell …

Designing biological compartmentalization

AH Chen, PA Silver - Trends in cell biology, 2012 - cell.com
Intracellular organization is a key factor in cell metabolism. Cells have evolved various
organizational systems to solve the challenges of toxic pathway intermediates, competing …

Multi-subunit acetyl-CoA carboxylases

JE Cronan Jr, GL Waldrop - Progress in lipid research, 2002 - Elsevier
Acetyl-CoA carboxylase (ACC) catalyses the first committed step of fatty acid synthesis, the
carboxylation of acetyl-CoA to malonyl-CoA. Two physically distinct types of enzymes are …

Evolution of function in protein superfamilies, from a structural perspective

AE Todd, CA Orengo, JM Thornton - Journal of molecular biology, 2001 - Elsevier
The recent growth in protein databases has revealed the functional diversity of many protein
superfamilies. We have assessed the functional variation of homologous enzyme …

A Ni-Fe-Cu center in a bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase

TI Doukov, TM Iverson, J Seravalli, SW Ragsdale… - Science, 2002 - science.org
A metallocofactor containing iron, sulfur, copper, and nickel has been discovered in the
enzyme carbon monoxide dehydrogenase/acetyl-CoA (coenzyme A) synthase from …

Substrate channeling and enzyme complexes for biotechnological applications

YHP Zhang - Biotechnology advances, 2011 - Elsevier
Substrate channeling is a process of transferring the product of one enzyme to an adjacent
cascade enzyme or cell without complete mixing with the bulk phase. Such phenomena can …