Updated review of advances in microRNAs and complex diseases: taxonomy, trends and challenges of computational models
Since the problem proposed in late 2000s, microRNA–disease association (MDA)
predictions have been implemented based on the data fusion paradigm. Integrating diverse …
predictions have been implemented based on the data fusion paradigm. Integrating diverse …
Natural language processing systems for capturing and standardizing unstructured clinical information: a systematic review
K Kreimeyer, M Foster, A Pandey, N Arya… - Journal of biomedical …, 2017 - Elsevier
We followed a systematic approach based on the Preferred Reporting Items for Systematic
Reviews and Meta-Analyses to identify existing clinical natural language processing (NLP) …
Reviews and Meta-Analyses to identify existing clinical natural language processing (NLP) …
Neuro-symbolic representation learning on biological knowledge graphs
Motivation Biological data and knowledge bases increasingly rely on Semantic Web
technologies and the use of knowledge graphs for data integration, retrieval and federated …
technologies and the use of knowledge graphs for data integration, retrieval and federated …
Computational methods for identifying similar diseases
L Cheng, H Zhao, P Wang, W Zhou, M Luo, T Li… - … Therapy-Nucleic Acids, 2019 - cell.com
Although our knowledge of human diseases has increased dramatically, the molecular
basis, phenotypic traits, and therapeutic targets of most diseases still remain unclear. An …
basis, phenotypic traits, and therapeutic targets of most diseases still remain unclear. An …
Artificial intelligence (AI) in rare diseases: is the future brighter?
The amount of data collected and managed in (bio) medicine is ever-increasing. Thus, there
is a need to rapidly and efficiently collect, analyze, and characterize all this information …
is a need to rapidly and efficiently collect, analyze, and characterize all this information …
The anatomy of phenotype ontologies: principles, properties and applications
GV Gkoutos, PN Schofield… - Briefings in …, 2018 - academic.oup.com
The past decade has seen an explosion in the collection of genotype data in domains as
diverse as medicine, ecology, livestock and plant breeding. Along with this comes the …
diverse as medicine, ecology, livestock and plant breeding. Along with this comes the …
Computational drug repositioning for rare diseases in the era of precision medicine
Highlights•Next-generation sequencing technology accelerates rare disease research.•
Accumulated genomics information aids orphan drug development.•Novel drug …
Accumulated genomics information aids orphan drug development.•Novel drug …
[PDF][PDF] Application and evaluation of knowledge graph embeddings in biomedical data
M Alshahrani, MA Thafar, M Essack - PeerJ Computer Science, 2021 - peerj.com
Linked data and bio-ontologies enabling knowledge representation, standardization, and
dissemination are an integral part of developing biological and biomedical databases. That …
dissemination are an integral part of developing biological and biomedical databases. That …
A framework for evaluating the technical performance of multiparameter quantitative imaging biomarkers (mp-QIBs)
NA Obuchowski, E Huang, MS Nandita, D Raunig… - Academic radiology, 2023 - Elsevier
Multiparameter quantitative imaging incorporates anatomical, functional, and/or behavioral
biomarkers to characterize tissue, detect disease, identify phenotypes, define longitudinal …
biomarkers to characterize tissue, detect disease, identify phenotypes, define longitudinal …
Extracting medical entities from social media
Accurately extracting medical entities from social media is challenging because people use
informal language with different expressions for the same concept, and they also make …
informal language with different expressions for the same concept, and they also make …