A pragmatic guide to enrichment strategies for mass spectrometry–based glycoproteomics

NM Riley, CR Bertozzi, SJ Pitteri - Molecular & Cellular Proteomics, 2021 - ASBMB
Glycosylation is a prevalent, yet heterogeneous modification with a broad range of
implications in molecular biology. This heterogeneity precludes enrichment strategies that …

Phosphoproteomics in the age of rapid and deep proteome profiling

NM Riley, JJ Coon - Analytical chemistry, 2016 - ACS Publications
Protein phosphorylation is a post-translational modification (PTM) that orchestrates a diverse
array of cellular processes. Because this modification serves as a rapid and reversible …

Ion activation methods for peptides and proteins

JS Brodbelt - Analytical chemistry, 2016 - ACS Publications
The analysis of peptides and proteins as well as the grander scope of proteomics (large
scale study of proteins) has been advanced by the development of a versatile array of ion …

The role of electron transfer dissociation in modern proteomics

NM Riley, JJ Coon - Analytical Chemistry, 2018 - ACS Publications
(MS) and MS-driven proteomics have continued to develop as the premier tools for
characterizing proteome composition, structure, and function. 2 The new era of proteomics …

pHisphorylation: the emergence of histidine phosphorylation as a reversible regulatory modification

SR Fuhs, T Hunter - Current opinion in cell biology, 2017 - Elsevier
Highlights•Histidine phosphorylation (pHis) is reversible by specific kinases and
phosphatases.•pHis is heat and acid labile, but stable under alkaline conditions.•Stable pHis …

Interactive peptide spectral annotator: a versatile web-based tool for proteomic applications

DR Brademan, NM Riley, NW Kwiecien… - Molecular & Cellular …, 2019 - ASBMB
Here we present IPSA, an innovative web-based spectrum annotator that visualizes and
characterizes peptide tandem mass spectra. A tool for the scientific community, IPSA can …

Phosphopeptide fragmentation and site localization by mass spectrometry: an update

CM Potel, S Lemeer, AJR Heck - Analytical chemistry, 2018 - ACS Publications
Pioneering work by, among others, the groups of Hunt and Mann at the start of this century
opened up the era of mass spectrometry (MS)-based phosphoproteomics. 1− 3 Through …

Protein identification by 3D OrbiSIMS to facilitate in situ imaging and depth profiling

AM Kotowska, GF Trindade, PM Mendes… - Nature …, 2020 - nature.com
Label-free protein characterization at surfaces is commonly achieved using digestion and/or
matrix application prior to mass spectrometry. We report the assignment of undigested …

Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

[HTML][HTML] N-glycoproteomics of brain synapses and synaptic vesicles

MM Bradberry, TM Peters-Clarke, E Shishkova… - Cell reports, 2023 - cell.com
At mammalian neuronal synapses, synaptic vesicle (SV) glycoproteins are essential for
robust neurotransmission. Asparagine (N)-linked glycosylation is required for delivery of the …