Efficient access to chemical information contained in scientific literature, patents, technical
reports, or the web is a pressing need shared by researchers and patent attorneys from …

Motivation Annotation tools are applied to build training and test corpora, which are
essential for the development and evaluation of new natural language processing …

Abstract PubTator Central (https://www. ncbi. nlm. nih. gov/research/pubtator/) is a web
service for viewing and retrieving bioconcept annotations in full text biomedical articles …

Abstract The Biological General Repository for Interaction Datasets (BioGRID:
https://thebiogrid. org) is an open access database dedicated to the annotation and archival …

Community-run, formal evaluations and manually annotated text corpora are critically
important for advancing biomedical text-mining research. Recently in BioCreative V, a new …

The reconstruction of transcriptional regulatory networks (TRNs) is a long-standing
challenge in human genetics. Numerous computational methods have been developed to …

The automatic extraction of chemical information from text requires the recognition of
chemical entity mentions as one of its key steps. When developing supervised named entity …

Training and evaluating language models increasingly requires the construction of meta-
datasets--diverse collections of curated data with clear provenance. Natural language …

One effective way to improve the state of the art is through competitions. Following the
success of the Critical Assessment of protein Structure Prediction (CASP) in bioinformatics …

Tumors from individuals with cancer are frequently genetically profiled for information about
the driving forces behind the disease. We present the CancerMine resource, a text-mined …