A guide for the diagnosis of rare and undiagnosed disease: beyond the exome

S Marwaha, JW Knowles, EA Ashley - Genome medicine, 2022 - Springer
Rare diseases affect 30 million people in the USA and more than 300–400 million
worldwide, often causing chronic illness, disability, and premature death. Traditional …

The human phenotype ontology in 2017

S Köhler, NA Vasilevsky, M Engelstad… - Nucleic acids …, 2017 - academic.oup.com
Deep phenotyping has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …

Zebrafish information network, the knowledgebase for Danio rerio research

YM Bradford, CE Van Slyke, L Ruzicka, A Singer… - Genetics, 2022 - academic.oup.com
Abstract The Zebrafish Information Network (zfin. org) is the central repository for Danio rerio
genetic and genomic data. The Zebrafish Information Network has served the zebrafish …

Classification, ontology, and precision medicine

MA Haendel, CG Chute… - New England Journal of …, 2018 - Mass Medical Soc
Ontologies, Phenotypes, and Big Data Data-organizing methods have been in place for
centuries, but very large data sets have come into being relatively recently. The authors …

The Matchmaker Exchange: a platform for rare disease gene discovery

AA Philippakis, DR Azzariti, S Beltran… - Human …, 2015 - Wiley Online Library
There are few better examples of the need for data sharing than in the rare disease
community, where patients, physicians, and researchers must search for “the needle in a …

[PDF][PDF] The human phenotype ontology in 2017

S Kohler, NA Vasilevsky, M Engelstad, E Foster… - 2017 - repository.ubn.ru.nl
Deep phenotyping has been defined as the precise and comprehensive analysis of
phenotypic abnormalities in which the individual components of the phenotype are observed …

<? mode longauthoraffil?> The Human Phenotype Ontology in 2024: phenotypes around the world

MA Gargano, N Matentzoglu, B Coleman… - Nucleic acids …, 2024 - academic.oup.com
Abstract The Human Phenotype Ontology (HPO) is a widely used resource that
comprehensively organizes and defines the phenotypic features of human disease …

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data

S Köhler, SC Doelken, CJ Mungall, S Bauer… - Nucleic acids …, 2014 - academic.oup.com
Abstract The Human Phenotype Ontology (HPO) project, available at http://www. human-
phenotype-ontology. org, provides a structured, comprehensive and well-defined set of …

Next-generation diagnostics and disease-gene discovery with the Exomiser

D Smedley, JOB Jacobsen, M Jäger, S Köhler… - Nature protocols, 2015 - nature.com
Exomiser is an application that prioritizes genes and variants in next-generation sequencing
(NGS) projects for novel disease-gene discovery or differential diagnostics of Mendelian …

The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species

CJ Mungall, JA McMurry, S Köhler… - Nucleic acids …, 2017 - academic.oup.com
The correlation of phenotypic outcomes with genetic variation and environmental factors is a
core pursuit in biology and biomedicine. Numerous challenges impede our progress: patient …