Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology
Data-independent acquisition mass spectrometry (DIA-MS) is a next generation proteomic
methodology that generates permanent digital proteome maps offering highly reproducible …
methodology that generates permanent digital proteome maps offering highly reproducible …
Advances in data‐independent acquisition mass spectrometry towards comprehensive digital proteome landscape
RB Kitata, JC Yang, YJ Chen - Mass spectrometry reviews, 2023 - Wiley Online Library
The data‐independent acquisition mass spectrometry (DIA‐MS) has rapidly evolved as a
powerful alternative for highly reproducible proteome profiling with a unique strength of …
powerful alternative for highly reproducible proteome profiling with a unique strength of …
Cancer neoantigen prioritization through sensitive and reliable proteogenomics analysis
Genomics-based neoantigen discovery can be enhanced by proteomic evidence, but there
remains a lack of consensus on the performance of different quality control methods for …
remains a lack of consensus on the performance of different quality control methods for …
A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS
Abstract Data-Independent Acquisition (DIA) is a method to improve consistent identification
and precise quantitation of peptides and proteins by mass spectrometry (MS). The targeted …
and precise quantitation of peptides and proteins by mass spectrometry (MS). The targeted …
Technical advancement and practical considerations of LC-MS/MS-based methods for host cell protein identification and quantitation to support process development
J Guo, R Kufer, D Li, S Wohlrab… - MAbs, 2023 - Taylor & Francis
Host cell proteins (HCPs) are process-related impurities derived from the manufacturing of
recombinant biotherapeutics. Residual HCP in drug products, ranging from 1 to 100 ppm (ng …
recombinant biotherapeutics. Residual HCP in drug products, ranging from 1 to 100 ppm (ng …
Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity
M van Oostrum, B Campbell, C Seng, M Müller… - Nature …, 2020 - nature.com
Neurons are highly compartmentalized cells with tightly controlled subcellular protein
organization. While brain transcriptome, connectome and global proteome maps are being …
organization. While brain transcriptome, connectome and global proteome maps are being …
Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes
Most catalytic, structural and regulatory functions of the cell are carried out by functional
modules, typically complexes containing or consisting of proteins. The composition and …
modules, typically complexes containing or consisting of proteins. The composition and …
A new mass spectral library for high-coverage and reproducible analysis of the Plasmodium falciparum–infected red blood cell proteome
Background Plasmodium falciparum causes the majority of malaria mortality worldwide, and
the disease occurs during the asexual red blood cell (RBC) stage of infection. In the …
the disease occurs during the asexual red blood cell (RBC) stage of infection. In the …
Stratification of follicular thyroid tumours using data‐independent acquisition proteomics and a comprehensive thyroid tissue spectral library
Thyroid nodules occur in about 60% of the population. A major challenge in thyroid nodule
diagnosis is to distinguish between follicular adenoma (FA) and carcinoma (FTC). Here, we …
diagnosis is to distinguish between follicular adenoma (FA) and carcinoma (FTC). Here, we …
Computational optimization of spectral library size improves DIA-MS proteome coverage and applications to 15 tumors
W Ge, X Liang, F Zhang, Y Hu, L Xu… - Journal of Proteome …, 2021 - ACS Publications
Efficient peptide and protein identifications from data-independent acquisition mass
spectrometric (DIA-MS) data typically rely on a project-specific spectral library with a suitable …
spectrometric (DIA-MS) data typically rely on a project-specific spectral library with a suitable …