How to usefully compare homologous plant genes and chromosomes as DNA sequences

E Lyons, M Freeling - The Plant Journal, 2008 - Wiley Online Library
There are four sequenced and publicly available plant genomes to date. With many more
slated for completion, one challenge will be to use comparative genomic methods to detect …

Gut-licensed IFNγ+ NK cells drive LAMP1+TRAIL+ anti-inflammatory astrocytes

LM Sanmarco, MA Wheeler, C Gutiérrez-Vázquez… - Nature, 2021 - nature.com
Astrocytes are glial cells that are abundant in the central nervous system (CNS) and that
have important homeostatic and disease-promoting functions. However, little is known about …

MAFG-driven astrocytes promote CNS inflammation

MA Wheeler, IC Clark, EC Tjon, Z Li, SEJ Zandee… - Nature, 2020 - nature.com
Multiple sclerosis is a chronic inflammatory disease of the CNS. Astrocytes contribute to the
pathogenesis of multiple sclerosis, but little is known about the heterogeneity of astrocytes …

Comparative analysis of insulin gene promoters: implications for diabetes research

CW Hay, K Docherty - Diabetes, 2006 - Am Diabetes Assoc
DNA sequences that regulate expression of the insulin gene are located within a region
spanning∼ 400 bp that flank the transcription start site. This region, the insulin promoter …

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

AE Darling, B Mau, NT Perna - PloS one, 2010 - journals.plos.org
Background Multiple genome alignment remains a challenging problem. Effects of
recombination including rearrangement, segmental duplication, gain, and loss can create a …

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

A Siepel, G Bejerano, JS Pedersen… - Genome …, 2005 - genome.cshlp.org
We have conducted a comprehensive search for conserved elements in vertebrate
genomes, using genome-wide multiple alignments of five vertebrate species (human …

Control of Treg and TH17 cell differentiation by the aryl hydrocarbon receptor

FJ Quintana, AS Basso, AH Iglesias, T Korn, MF Farez… - Nature, 2008 - nature.com
Regulatory T cells (Treg) expressing the transcription factor Foxp3 control the autoreactive
components of the immune system. The development of Treg cells is reciprocally related to …

Environmental control of astrocyte pathogenic activities in CNS inflammation

MA Wheeler, M Jaronen, R Covacu, SEJ Zandee… - Cell, 2019 - cell.com
Genome-wide studies have identified genetic variants linked to neurologic diseases.
Environmental factors also play important roles, but no methods are available for their …

Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model

RP Smith, L Taher, RP Patwardhan, MJ Kim, F Inoue… - Nature …, 2013 - nature.com
Despite continual progress in the cataloging of vertebrate regulatory elements, little is known
about their organization and regulatory architecture. Here we describe a massively parallel …

miR-335 orchestrates cell proliferation, migration and differentiation in human mesenchymal stem cells

M Tomé, P López-Romero, C Albo… - Cell Death & …, 2011 - nature.com
In spite of the extensive potential of human mesenchymal stem cells (hMSCs) in cell therapy,
little is known about the molecular mechanisms that regulate their therapeutic properties. We …