Antigen presentation in cancer—mechanisms and clinical implications for immunotherapy

K Yang, A Halima, TA Chan - Nature Reviews Clinical Oncology, 2023 - nature.com
Over the past decade, the emergence of effective immunotherapies has revolutionized the
clinical management of many types of cancers. However, long-term durable tumour control …

[HTML][HTML] Biomarkers of response to checkpoint inhibitors beyond PD-L1 in lung cancer

LM Sholl - Modern Pathology, 2022 - Elsevier
Immunotherapy, including use of checkpoint inhibitors against PD-1, PD-L1, and CTLA-4,
forms the backbone of oncologic management for the majority of non-small cell lung …

[HTML][HTML] Identification of potential resistance mechanisms and therapeutic targets for the relapse of BCMA CAR-T therapy in relapsed/refractory multiple myeloma …

W Li, B Zhang, W Cao, W Zhang, T Li, L Liu… - … Hematology & Oncology, 2023 - Springer
Abstract Background BCMA CAR-T is highly effective for relapsed/refractory multiple
myeloma (R/R-MM) and significantly improves the survival of patients. However, the short …

[HTML][HTML] Ferredoxin 1 is a cuproptosis-key gene responsible for tumor immunity and drug sensitivity: A pan-cancer analysis

L Yang, Y Zhang, Y Wang, P Jiang, F Liu… - Frontiers in …, 2022 - frontiersin.org
Ferredoxin 1 (FDX1) functions by transferring electrons from NADPH to mitochondrial
cytochrome P450 via the ferredoxin reductase and is the key regulator in copper-dependent …

[HTML][HTML] Tracking the evolution of esophageal squamous cell carcinoma under dynamic immune selection by multi-omics sequencing

S Cui, N McGranahan, J Gao, P Chen, W Jiang… - Nature …, 2023 - nature.com
Intratumoral heterogeneity (ITH) has been linked to decreased efficacy of clinical treatments.
However, although genomic ITH has been characterized in genetic, transcriptomic and …

[HTML][HTML] Pervasiveness of HLA allele-specific expression loss across tumor types

I Filip, A Wang, O Kravets, R Orenbuch, J Zhao… - Genome Medicine, 2023 - Springer
Background Efficient presentation of mutant peptide fragments by the human leukocyte
antigen class I (HLA-I) genes is necessary for immune-mediated killing of cancer cells …

HLA and tumour immunology: immune escape, immunotherapy and immune-related adverse events

N Jiang, Y Yu, D Wu, S Wang, Y Fang, H Miao… - Journal of cancer …, 2023 - Springer
Purpose As molecules responsible for presenting antigens to T lymphocytes, leukocytes
antigens (HLAs) play a vital role in cancer immunology. This review aims to provide current …

Improving generalization of machine learning-identified biomarkers using causal modelling with examples from immune receptor diagnostics

M Pavlović, GS Al Hajj, C Kanduri, J Pensar… - Nature Machine …, 2024 - nature.com
Abstract Machine learning is increasingly used to discover diagnostic and prognostic
biomarkers from high-dimensional molecular data. However, a variety of factors related to …

[HTML][HTML] Tackling the current dilemma of immunotherapy in extensive-stage small cell lung cancer: A promising strategy of combining with radiotherapy

K Kang, Y Wu, Z Yao, Y Lu - Cancer Letters, 2023 - Elsevier
Progress in the treatment of small cell lung cancer (SCLC) has been modest over the past
decades until the advent of immune checkpoint inhibitors, which have redefined the …

[HTML][HTML] Integrated analysis of single-cell and bulk RNA-sequencing identifies a signature based on T-cell marker genes to predict prognosis and therapeutic response …

X Shi, A Dong, X Jia, G Zheng, N Wang… - Frontiers in …, 2022 - frontiersin.org
Cancer immunotherapy is an increasingly successful strategy for treating patients with
advanced or conventionally drug-resistant cancers. T cells have been proved to play …