Recent African strains of Zika virus display higher transmissibility and fetal pathogenicity than Asian strains
The global emergence of Zika virus (ZIKV) revealed the unprecedented ability for a mosquito-
borne virus to cause congenital birth defects. A puzzling aspect of ZIKV emergence is that all …
borne virus to cause congenital birth defects. A puzzling aspect of ZIKV emergence is that all …
SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in Italy
M Giovanetti, E Cella, F Benedetti… - Communications …, 2021 - nature.com
We investigated SARS-CoV-2 transmission dynamics in Italy, one of the countries hit hardest
by the pandemic, using phylodynamic analysis of viral genetic and epidemiological data. We …
by the pandemic, using phylodynamic analysis of viral genetic and epidemiological data. We …
Modeling intra-mosquito dynamics of Zika virus and its dose-dependence confirms the low epidemic potential of Aedes albopictus
S Lequime, JS Dehecq, S Matheus, F de Laval… - PLoS …, 2020 - journals.plos.org
Originating from African forests, Zika virus (ZIKV) has now emerged worldwide in urbanized
areas, mainly transmitted by Aedes aegypti mosquitoes. Although Aedes albopictus can …
areas, mainly transmitted by Aedes aegypti mosquitoes. Although Aedes albopictus can …
DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction
In the midst of an outbreak or sustained epidemic, reliable prediction of transmission risks
and patterns of spread is critical to inform public health programs. Projections of …
and patterns of spread is critical to inform public health programs. Projections of …
Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics
TARDiS is a novel phylogenetic tool for optimal genetic subsampling. It optimizes both
genetic diversity and temporal distribution through a genetic algorithm. Availability and …
genetic diversity and temporal distribution through a genetic algorithm. Availability and …
[HTML][HTML] Novel insights on unraveling dynamics of transmission clusters in outbreaks using phylogeny-based methods
Molecular data analysis is invaluable in understanding the overall behavior of a rapidly
spreading virus population when epidemiological surveillance is problematic. It is also …
spreading virus population when epidemiological surveillance is problematic. It is also …
e3SIM: epidemiological-ecological-evolutionary simulation framework for genomic epidemiology
Infectious disease dynamics are driven by the complex interplay of epidemiological,
ecological, and evolutionary processes. Accurately modeling these interactions is crucial for …
ecological, and evolutionary processes. Accurately modeling these interactions is crucial for …
Using genetic data to identify transmission risk factors: Statistical assessment and application to tuberculosis transmission
Identifying host factors that influence infectious disease transmission is an important step
toward developing interventions to reduce disease incidence. Recent advances in methods …
toward developing interventions to reduce disease incidence. Recent advances in methods …
Chikungunya intra-vector dynamics in Aedes albopictus from Lyon (France) upon exposure to a human viremia-like dose range reveals vector barrier's …
B Viginier, L Cappuccio, C Garnier… - Peer Community …, 2023 - peercommunityjournal.org
Arbovirus emergence and epidemic potential, as approximated by the vectorial capacity
formula, depends on host and vector parameters, including the vector's intrinsic ability to …
formula, depends on host and vector parameters, including the vector's intrinsic ability to …
[HTML][HTML] Untangling the stranglehold through mathematical modelling of Streptococcus equi subspecies equi transmission
R Houben, JR Newton, C van Maanen… - Preventive Veterinary …, 2024 - Elsevier
Strangles, a disease caused by infection with Streptococccus equi subspecies equi (S.
equi), is endemic worldwide and one of the most frequently diagnosed infectious diseases of …
equi), is endemic worldwide and one of the most frequently diagnosed infectious diseases of …