Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation
Identifying and monitoring locally adaptive genetic variation can have direct utility for
conserving species at risk, especially when management may include actions such as …
conserving species at risk, especially when management may include actions such as …
Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters
Within aquaculture industries, selection based on genomic information (genomic selection)
has the profound potential to change genetic improvement programs and production …
has the profound potential to change genetic improvement programs and production …
Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality
ZN Kamvar, JC Brooks, NJ Grünwald - Frontiers in genetics, 2015 - frontiersin.org
To gain a detailed understanding of how plant microbes evolve and adapt to hosts,
pesticides, and other factors, knowledge of the population dynamics and evolutionary history …
pesticides, and other factors, knowledge of the population dynamics and evolutionary history …
Lost in parameter space: a road map for stacks
JR Paris, JR Stevens… - Methods in Ecology and …, 2017 - Wiley Online Library
Restriction site‐Associated DNA sequencing (RAD‐seq) has become a widely adopted
method for genotyping populations of model and non‐model organisms. Generating a …
method for genotyping populations of model and non‐model organisms. Generating a …
These aren't the loci you'e looking for: Principles of effective SNP filtering for molecular ecologists
Sequencing reduced‐representation libraries of restriction site‐associated DNA (RAD seq)
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
to identify single nucleotide polymorphisms (SNP s) is quickly becoming a standard …
Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference
Restriction site‐associated DNA sequencing (RAD‐seq) provides high‐resolution
population genomic data at low cost, and has become an important component in ecological …
population genomic data at low cost, and has become an important component in ecological …
Short tree, long tree, right tree, wrong tree: new acquisition bias corrections for inferring SNP phylogenies
AD Leaché, BL Banbury, J Felsenstein… - Systematic …, 2015 - academic.oup.com
Single nucleotide polymorphisms (SNPs) are useful markers for phylogenetic studies owing
in part to their ubiquity throughout the genome and ease of collection. Restriction site …
in part to their ubiquity throughout the genome and ease of collection. Restriction site …
How to identify sex chromosomes and their turnover
Although sex is a fundamental component of eukaryotic reproduction, the genetic systems
that control sex determination are highly variable. In many organisms the presence of sex …
that control sex determination are highly variable. In many organisms the presence of sex …
Practical considerations for plant phylogenomics
MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
Conservation genomics of natural and managed populations: building a conceptual and practical framework
The boom of massive parallel sequencing (MPS) technology and its applications in
conservation of natural and managed populations brings new opportunities and challenges …
conservation of natural and managed populations brings new opportunities and challenges …