Polymer translocation: the first two decades and the recent diversification
Probably no other field of statistical physics at the borderline of soft matter and biological
physics has caused such a flurry of papers as polymer translocation since the 1994 …
physics has caused such a flurry of papers as polymer translocation since the 1994 …
Polymer translocation and nanopore sequencing: a review of advances and challenges
Various biological processes involve the translocation of macromolecules across
nanopores; these pores are basically protein channels embedded in membranes …
nanopores; these pores are basically protein channels embedded in membranes …
Single-polymer dynamics under constraints: scaling theory and computer experiment
A Milchev - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
The relaxation, diffusion and translocation dynamics of single linear polymer chains in
confinement is briefly reviewed with emphasis on the comparison between theoretical …
confinement is briefly reviewed with emphasis on the comparison between theoretical …
Asymmetric dynamics of DNA entering and exiting a strongly confining nanopore
In nanopore sensing, changes in ionic current are used to analyse single molecules in
solution. The translocation dynamics of polyelectrolytes is of particular interest given …
solution. The translocation dynamics of polyelectrolytes is of particular interest given …
Unifying model of driven polymer translocation
T Ikonen, A Bhattacharya, T Ala-Nissila, W Sung - Physical Review E …, 2012 - APS
We present a Brownian dynamics model of driven polymer translocation, in which
nonequilibrium memory effects arising from tension propagation (TP) along the cis side …
nonequilibrium memory effects arising from tension propagation (TP) along the cis side …
Origins and consequences of velocity fluctuations during DNA passage through a nanopore
B Lu, F Albertorio, DP Hoogerheide, JA Golovchenko - Biophysical journal, 2011 - cell.com
We describe experiments and modeling results that reveal and explain the distribution of
times that identical double-stranded DNA (dsDNA) molecules take to pass through a voltage …
times that identical double-stranded DNA (dsDNA) molecules take to pass through a voltage …
Force-driven polymer translocation through a nanopore: An old problem revisited
P Rowghanian, AY Grosberg - The Journal of Physical Chemistry …, 2011 - ACS Publications
We consider DNA translocation through a pore in a planar membrane. The pore is so narrow
that only one DNA segment can fit in. Assuming that the biasing force f acts inside the pore …
that only one DNA segment can fit in. Assuming that the biasing force f acts inside the pore …
Influence of non-universal effects on dynamical scaling in driven polymer translocation
T Ikonen, A Bhattacharya, T Ala-Nissila… - The Journal of chemical …, 2012 - pubs.aip.org
We study the dynamics of driven polymer translocation using both molecular dynamics (MD)
simulations and a theoretical model based on the non-equilibrium tension propagation on …
simulations and a theoretical model based on the non-equilibrium tension propagation on …
Iso-flux tension propagation theory of driven polymer translocation: The role of initial configurations
J Sarabadani, T Ikonen, T Ala-Nissila - The Journal of Chemical …, 2014 - pubs.aip.org
We investigate the dynamics of pore-driven polymer translocation by theoretical analysis
and molecular dynamics (MD) simulations. Using the tension propagation theory within the …
and molecular dynamics (MD) simulations. Using the tension propagation theory within the …
Theory of pore-driven and end-pulled polymer translocation dynamics through a nanopore: An overview
J Sarabadani, T Ala-Nissila - Journal of Physics: Condensed …, 2018 - iopscience.iop.org
We review recent progress on the theory of dynamics of polymer translocation through a
nanopore based on the iso-flux tension propagation (IFTP) theory. We investigate both pore …
nanopore based on the iso-flux tension propagation (IFTP) theory. We investigate both pore …