DNA replication fidelity

TA Kunkel, K Bebenek - Annual review of biochemistry, 2000 - annualreviews.org
▪ Abstract DNA replication fidelity is a key determinant of genome stability and is central to
the evolution of species and to the origins of human diseases. Here we review our current …

The catalytic mechanisms of binuclear metallohydrolases

N Mitić, SJ Smith, A Neves, LW Guddat… - Chemical …, 2006 - ACS Publications
Binuclear metallohydrolases are a structurally diverse group of enzymes that use binuclear
metal ion centers to catalyze the hydrolysis of amides and esters of carboxylic and …

[HTML][HTML] Remdesivir is a delayed translocation inhibitor of SARS-CoV-2 replication

JPK Bravo, TL Dangerfield, DW Taylor, KA Johnson - Molecular cell, 2021 - cell.com
Remdesivir is a nucleoside analog approved by the US FDA for treatment of COVID-19.
Here, we present a 3.9-Å-resolution cryo-EM reconstruction of a remdesivir-stalled RNA …

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution

S Doublie, S Tabor, AM Long, CC Richardson… - Nature, 1998 - nature.com
DNA polymerases change their specificity for nucleotide substrates with each catalytic cycle,
while achieving error frequencies in the range of 10− 5to 10− 6. Here we present a 2.2 Å …

Conformational coupling in DNA polymerase fidelity.

KA Johnson - Annual review of biochemistry, 1993 - europepmc.org
The fidelity of DNA polymerases is largely attributable to a two-step nucleotide binding
mechanism. In the first step, binding contacts are initially made between the template and …

[HTML][HTML] A live, impaired-fidelity coronavirus vaccine protects in an aged, immunocompromised mouse model of lethal disease

RL Graham, MM Becker, LD Eckerle, M Bolles… - Nature medicine, 2012 - nature.com
Live, attenuated RNA virus vaccines are efficacious but subject to reversion to virulence.
Among RNA viruses, replication fidelity is recognized as a key determinant of virulence and …

Mechanism of inhibition of HIV-1 reverse transcriptase by nonnucleoside inhibitors

RA Spence, WM Kati, KS Anderson, KA Johnson - Science, 1995 - science.org
The mechanism of inhibition of HIV-1 reverse transcriptase by three nonnucleoside
inhibitors is described. Nevirapine, O-TIBO, and CI-TIBO each bind to a hydrophobic pocket …

Single-molecule studies of the effect of template tension on T7 DNA polymerase activity

GJL Wuite, SB Smith, M Young, D Keller, C Bustamante - Nature, 2000 - nature.com
Abstract T7 DNA polymerase, catalyses DNA replication in vitro at rates of more than 100
bases per second and has a 3′→ 5′ exonuclease (nucleotide removing) activity at a …

[HTML][HTML] Structure of the replicating complex of a pol α family DNA polymerase

MC Franklin, J Wang, TA Steitz - Cell, 2001 - cell.com
We describe the 2.6 Å resolution crystal structure of RB69 DNA polymerase with primer-
template DNA and dTTP, capturing the step just before primer extension. This ternary …

Fluorescent in situ sequencing on polymerase colonies

RD Mitra, J Shendure, J Olejnik, GM Church - Analytical biochemistry, 2003 - Elsevier
Integration of DNA isolation, amplification, and sequencing can be achieved by the use of
polymerase colonies (polonies) and cycles of fluorescent dNTP incorporation. In this paper …