Supervised machine learning for population genetics: a new paradigm
DR Schrider, AD Kern - Trends in Genetics, 2018 - cell.com
As population genomic datasets grow in size, researchers are faced with the daunting task
of making sense of a flood of information. To keep pace with this explosion of data …
of making sense of a flood of information. To keep pace with this explosion of data …
From molecules to populations: appreciating and estimating recombination rate variation
JV Peñalba, JBW Wolf - Nature Reviews Genetics, 2020 - nature.com
Recombination is a central biological process with implications for many areas in the life
sciences. Yet we are only beginning to appreciate variation in the recombination rate along …
sciences. Yet we are only beginning to appreciate variation in the recombination rate along …
Genome-wide analyses of introgression between two sympatric Asian oak species
Introgression can be an important source of new alleles for adaption under rapidly changing
environments, perhaps even more important than standing variation. Though introgression …
environments, perhaps even more important than standing variation. Though introgression …
Contrasting signatures of genomic divergence during sympatric speciation
The transition from 'well-marked varieties' of a single species into 'well-defined species'—
especially in the absence of geographic barriers to gene flow (sympatric speciation)—has …
especially in the absence of geographic barriers to gene flow (sympatric speciation)—has …
Resequencing of 145 landmark cultivars reveals asymmetric sub-genome selection and strong founder genotype effects on wheat breeding in China
C Hao, C Jiao, J Hou, T Li, H Liu, Y Wang, J Zheng… - Molecular plant, 2020 - cell.com
Controlled pedigrees and the multi-decade timescale of national crop plant breeding
programs offer a unique experimental context for examining how selection affects plant …
programs offer a unique experimental context for examining how selection affects plant …
Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication
The budding yeast Saccharomyces cerevisiae can be found in the wild and is also
frequently associated with human activities. Despite recent insights into the phylogeny of this …
frequently associated with human activities. Despite recent insights into the phylogeny of this …
The unreasonable effectiveness of convolutional neural networks in population genetic inference
L Flagel, Y Brandvain… - Molecular biology and …, 2019 - academic.oup.com
Population-scale genomic data sets have given researchers incredible amounts of
information from which to infer evolutionary histories. Concomitant with this flood of data …
information from which to infer evolutionary histories. Concomitant with this flood of data …
Whole-genome resequencing of a worldwide collection of rapeseed accessions reveals the genetic basis of ecotype divergence
Rapeseed (Brassica napus), an important oilseed crop, has adapted to diverse climate
zones and latitudes by forming three main ecotype groups, namely winter, semi-winter, and …
zones and latitudes by forming three main ecotype groups, namely winter, semi-winter, and …
Hybrid speciation via inheritance of alternate alleles of parental isolating genes
Z Wang, Y Jiang, H Bi, Z Lu, Y Ma, X Yang, N Chen… - Molecular plant, 2021 - cell.com
It is increasingly realized that homoploid hybrid speciation (HHS), which involves no change
in chromosome number, is an important mechanism of speciation. HHS will likely increase in …
in chromosome number, is an important mechanism of speciation. HHS will likely increase in …
The origin of domestication genes in goats
Goat domestication was critical for agriculture and civilization, but its underlying genetic
changes and selection regimes remain unclear. Here, we analyze the genomes of …
changes and selection regimes remain unclear. Here, we analyze the genomes of …