Long-range enhancer–promoter contacts in gene expression control

S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …

The role of 3D genome organization in development and cell differentiation

H Zheng, W Xie - Nature reviews Molecular cell biology, 2019 - nature.com
In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically
packaged inside the nucleus. This complex genome organization includes multiscale …

Coactivator condensation at super-enhancers links phase separation and gene control

BR Sabari, A Dall'Agnese, A Boija, IA Klein, EL Coffey… - Science, 2018 - science.org
INTRODUCTION Mammalian genes that play prominent roles in healthy and diseased
cellular states are often controlled by special DNA elements called super-enhancers (SEs) …

[HTML][HTML] YY1 is a structural regulator of enhancer-promoter loops

AS Weintraub, CH Li, AV Zamudio, AA Sigova… - Cell, 2017 - cell.com
There is considerable evidence that chromosome structure plays important roles in gene
control, but we have limited understanding of the proteins that contribute to structural …

A phase separation model for transcriptional control

D Hnisz, K Shrinivas, RA Young, AK Chakraborty… - Cell, 2017 - cell.com
Phase-separated multi-molecular assemblies provide a general regulatory mechanism to
compartmentalize biochemical reactions within cells. We propose that a phase separation …

The cell cycle in stem cell proliferation, pluripotency and differentiation

L Liu, W Michowski, A Kolodziejczyk, P Sicinski - Nature cell biology, 2019 - nature.com
Cyclins, cyclin-dependent kinases and other components of the core cell cycle machinery
drive cell division. Growing evidence indicates that this machinery operates in a distinct …

Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization

EP Nora, A Goloborodko, AL Valton, JH Gibcus… - Cell, 2017 - cell.com
The molecular mechanisms underlying folding of mammalian chromosomes remain poorly
understood. The transcription factor CTCF is a candidate regulator of chromosomal …

[HTML][HTML] Transcriptional addiction in cancer

JE Bradner, D Hnisz, RA Young - Cell, 2017 - cell.com
Cancer arises from genetic alterations that invariably lead to dysregulated transcriptional
programs. These dysregulated programs can cause cancer cells to become highly …

Editing DNA methylation in the mammalian genome

XS Liu, H Wu, X Ji, Y Stelzer, X Wu, S Czauderna… - Cell, 2016 - cell.com
Mammalian DNA methylation is a critical epigenetic mechanism orchestrating gene
expression networks in many biological processes. However, investigation of the functions …

[HTML][HTML] A compendium of chromatin contact maps reveals spatially active regions in the human genome

AD Schmitt, M Hu, I Jung, Z Xu, Y Qiu, CL Tan, Y Li… - Cell reports, 2016 - cell.com
The three-dimensional configuration of DNA is integral to all nuclear processes in
eukaryotes, yet our knowledge of the chromosome architecture is still limited. Genome-wide …