Long-range enhancer–promoter contacts in gene expression control
S Schoenfelder, P Fraser - Nature Reviews Genetics, 2019 - nature.com
Spatiotemporal gene expression programmes are orchestrated by transcriptional
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
enhancers, which are key regulatory DNA elements that engage in physical contacts with …
The role of 3D genome organization in development and cell differentiation
In eukaryotes, the genome does not exist as a linear molecule but instead is hierarchically
packaged inside the nucleus. This complex genome organization includes multiscale …
packaged inside the nucleus. This complex genome organization includes multiscale …
Coactivator condensation at super-enhancers links phase separation and gene control
INTRODUCTION Mammalian genes that play prominent roles in healthy and diseased
cellular states are often controlled by special DNA elements called super-enhancers (SEs) …
cellular states are often controlled by special DNA elements called super-enhancers (SEs) …
[HTML][HTML] YY1 is a structural regulator of enhancer-promoter loops
There is considerable evidence that chromosome structure plays important roles in gene
control, but we have limited understanding of the proteins that contribute to structural …
control, but we have limited understanding of the proteins that contribute to structural …
A phase separation model for transcriptional control
Phase-separated multi-molecular assemblies provide a general regulatory mechanism to
compartmentalize biochemical reactions within cells. We propose that a phase separation …
compartmentalize biochemical reactions within cells. We propose that a phase separation …
The cell cycle in stem cell proliferation, pluripotency and differentiation
L Liu, W Michowski, A Kolodziejczyk, P Sicinski - Nature cell biology, 2019 - nature.com
Cyclins, cyclin-dependent kinases and other components of the core cell cycle machinery
drive cell division. Growing evidence indicates that this machinery operates in a distinct …
drive cell division. Growing evidence indicates that this machinery operates in a distinct …
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization
The molecular mechanisms underlying folding of mammalian chromosomes remain poorly
understood. The transcription factor CTCF is a candidate regulator of chromosomal …
understood. The transcription factor CTCF is a candidate regulator of chromosomal …
[HTML][HTML] Transcriptional addiction in cancer
Cancer arises from genetic alterations that invariably lead to dysregulated transcriptional
programs. These dysregulated programs can cause cancer cells to become highly …
programs. These dysregulated programs can cause cancer cells to become highly …
Editing DNA methylation in the mammalian genome
Mammalian DNA methylation is a critical epigenetic mechanism orchestrating gene
expression networks in many biological processes. However, investigation of the functions …
expression networks in many biological processes. However, investigation of the functions …
[HTML][HTML] A compendium of chromatin contact maps reveals spatially active regions in the human genome
The three-dimensional configuration of DNA is integral to all nuclear processes in
eukaryotes, yet our knowledge of the chromosome architecture is still limited. Genome-wide …
eukaryotes, yet our knowledge of the chromosome architecture is still limited. Genome-wide …