Synthetic chromosomes, genomes, viruses, and cells

JC Venter, JI Glass, CA Hutchison, S Vashee - Cell, 2022 - cell.com
Synthetic genomics is the construction of viruses, bacteria, and eukaryotic cells with
synthetic genomes. It involves two basic processes: synthesis of complete genomes or …

Hold out the genome: a roadmap to solving the cis-regulatory code

CG de Boer, J Taipale - Nature, 2024 - nature.com
Gene expression is regulated by transcription factors that work together to read cis-
regulatory DNA sequences. The 'cis-regulatory code'—how cells interpret DNA sequences …

Mouse genome rewriting and tailoring of three important disease loci

W Zhang, I Golynker, R Brosh, A Fajardo, Y Zhu… - Nature, 2023 - nature.com
Genetically engineered mouse models (GEMMs) help us to understand human pathologies
and develop new therapies, yet faithfully recapitulating human diseases in mice is …

Design, construction, and functional characterization of a tRNA neochromosome in yeast

D Schindler, RSK Walker, S Jiang, AN Brooks, Y Wang… - Cell, 2023 - cell.com
Here, we report the design, construction, and characterization of a tRNA neochromosome, a
designer chromosome that functions as an additional, de novo counterpart to the native …

Synthetic yeast chromosome XI design provides a testbed for the study of extrachromosomal circular DNA dynamics

BA Blount, X Lu, MRM Driessen, D Jovicevic… - Cell Genomics, 2023 - cell.com
We describe construction of the synthetic yeast chromosome XI (synXI) and reveal the
effects of redesign at non-coding DNA elements. The 660-kb synthetic yeast genome project …

Establishing chromosomal design-build-test-learn through a synthetic chromosome and its combinatorial reconfiguration

JL Foo, S Kitano, AV Susanto, Z Jin, Y Lin, Z Luo… - Cell Genomics, 2023 - cell.com
Chromosome-level design-build-test-learn cycles (chrDBTLs) allow systematic
combinatorial reconfiguration of chromosomes with ease. Here, we established chrDBTL …

[HTML][HTML] Context-dependent neocentromere activity in synthetic yeast chromosome VIII

S Lauer, J Luo, L Lazar-Stefanita, W Zhang… - Cell Genomics, 2023 - cell.com
Pioneering advances in genome engineering, and specifically in genome writing, have
revolutionized the field of synthetic biology, propelling us toward the creation of synthetic …

Dissecting aneuploidy phenotypes by constructing Sc2. 0 chromosome VII and SCRaMbLEing synthetic disomic yeast

Y Shen, F Gao, Y Wang, Y Wang, J Zheng, J Gong… - Cell genomics, 2023 - cell.com
Aneuploidy compromises genomic stability, often leading to embryo inviability, and is
frequently associated with tumorigenesis and aging. Different aneuploid chromosome …

Consequences of a telomerase-related fitness defect and chromosome substitution technology in yeast synIX strains

LH McCulloch, V Sambasivam, AL Hughes, N Annaluru… - Cell Genomics, 2023 - cell.com
We describe the complete synthesis, assembly, debugging, and characterization of a
synthetic 404,963 bp chromosome, synIX (synthetic chromosome IX). Combined …

Building synthetic cells─ from the technology infrastructure to cellular entities

LJ Rothschild, NJH Averesch, EA Strychalski… - ACS Synthetic …, 2024 - ACS Publications
The de novo construction of a living organism is a compelling vision. Despite the astonishing
technologies developed to modify living cells, building a functioning cell “from scratch” has …