Detecting epistasis in human complex traits

WH Wei, G Hemani, CS Haley - Nature Reviews Genetics, 2014 - nature.com
Genome-wide association studies (GWASs) have become the focus of the statistical analysis
of complex traits in humans, successfully shedding light on several aspects of genetic …

Genetic modifiers and rare Mendelian disease

KMTH Rahit, M Tarailo-Graovac - Genes, 2020 - mdpi.com
Despite advances in high-throughput sequencing that have revolutionized the discovery of
gene defects in rare Mendelian diseases, there are still gaps in translating individual …

A survey about methods dedicated to epistasis detection

C Niel, C Sinoquet, C Dina, G Rocheleau - Frontiers in genetics, 2015 - frontiersin.org
During the past decade, findings of genome-wide association studies (GWAS) improved our
knowledge and understanding of disease genetics. To date, thousands of SNPs have been …

Travelling the world of gene–gene interactions

K Van Steen - Briefings in bioinformatics, 2012 - academic.oup.com
Over the last few years, main effect genetic association analysis has proven to be a
successful tool to unravel genetic risk components to a variety of complex diseases. In the …

An overview of SNP interactions in genome-wide association studies

P Li, M Guo, C Wang, X Liu, Q Zou - Briefings in functional …, 2015 - academic.oup.com
With the recent explosion in high-throughput genotyping technology, the amount and quality
of single-nucleotide polymorphism (SNP) data has increased exponentially. Therefore, the …

MACOED: a multi-objective ant colony optimization algorithm for SNP epistasis detection in genome-wide association studies

PJ Jing, HB Shen - Bioinformatics, 2014 - academic.oup.com
Motivation: The existing methods for genetic-interaction detection in genome-wide
association studies are designed from different paradigms, and their performances vary …

epiACO-a method for identifying epistasis based on ant Colony optimization algorithm

Y Sun, J Shang, JX Liu, S Li, CH Zheng - BioData mining, 2017 - Springer
Background Identifying epistasis or epistatic interactions, which refer to nonlinear interaction
effects of single nucleotide polymorphisms (SNPs), is essential to understand disease …

MTHSA-DHEI: multitasking harmony search algorithm for detecting high-order SNP epistatic interactions

S Tuo, C Li, F Liu, A Li, L He, ZW Geem… - Complex & Intelligent …, 2023 - Springer
Genome-wide association studies have succeeded in identifying genetic variants associated
with complex diseases, but the findings have not been well interpreted biologically. Although …

A review on methods for detecting SNP interactions in high-dimensional genomic data

S Uppu, A Krishna, RP Gopalan - IEEE/ACM transactions on …, 2016 - ieeexplore.ieee.org
In this era of genome-wide association studies (GWAS), the quest for understanding the
genetic architecture of complex diseases is rapidly increasing more than ever before. The …

Niche harmony search algorithm for detecting complex disease associated high-order SNP combinations

S Tuo, J Zhang, X Yuan, Z He, Y Liu, Z Liu - Scientific reports, 2017 - nature.com
Genome-wide association study is especially challenging in detecting high-order disease-
causing models due to model diversity, possible low or even no marginal effect of the model …