Evolution and implications of de novo genes in humans

LA Broeils, J Ruiz-Orera, B Snel, N Hubner… - Nature ecology & …, 2023 - nature.com
Genes and translated open reading frames (ORFs) that emerged de novo from previously
non-coding sequences provide species with opportunities for adaptation. When aberrantly …

[HTML][HTML] The origins and functions of de novo genes: Against all odds?

CM Weisman - Journal of Molecular Evolution, 2022 - Springer
Abstract “De novo” genes evolve from previously non-genic DNA. This strikes many of us as
remarkable, because it seems extraordinarily unlikely that random sequence would produce …

[HTML][HTML] De novo genes with an lncRNA origin encode unique human brain developmental functionality

NA An, J Zhang, F Mo, X Luan, L Tian… - Nature ecology & …, 2023 - nature.com
Human de novo genes can originate from neutral long non-coding RNA (lncRNA) loci and
are evolutionarily significant in general, yet how and why this all-or-nothing transition to …

[HTML][HTML] Mixing genome annotation methods in a comparative analysis inflates the apparent number of lineage-specific genes

CM Weisman, AW Murray, SR Eddy - Current Biology, 2022 - cell.com
Comparisons of genomes of different species are used to identify lineage-specific genes,
those genes that appear unique to one species or clade. Lineage-specific genes are often …

[HTML][HTML] Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila

E Witt, S Benjamin, N Svetec, L Zhao - Elife, 2019 - elifesciences.org
The testis is a peculiar tissue in many respects. It shows patterns of rapid gene evolution and
provides a hotspot for the origination of genetic novelties such as de novo genes …

Evolutionary trajectories of new duplicated and putative de novo genes

JC Montañés, M Huertas, X Messeguer… - Molecular biology and …, 2023 - academic.oup.com
The formation of new genes during evolution is an important motor of functional innovation,
but the rate at which new genes originate and the likelihood that they persist over longer …

[HTML][HTML] De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences

N Vakirlis, O Acar, B Hsu, N Castilho Coelho… - Nature …, 2020 - nature.com
Recent evidence demonstrates that novel protein-coding genes can arise de novo from non-
genic loci. This evolutionary innovation is thought to be facilitated by the pervasive …

[HTML][HTML] A vast evolutionarily transient translatome contributes to phenotype and fitness

A Wacholder, SB Parikh, NC Coelho, O Acar… - Cell systems, 2023 - cell.com
Translation is the process by which ribosomes synthesize proteins. Ribosome profiling
recently revealed that many short sequences previously thought to be noncoding are …

Evolution of new proteins from translated sORFs in long non-coding RNAs

J Ruiz-Orera, JL Villanueva-Cañas, MM Albà - Experimental cell research, 2020 - Elsevier
High throughput RNA sequencing techniques have revealed that a large fraction of the
genome is transcribed into long non-coding RNAs (lncRNAs). Unlike canonical protein …

Intergenic ORFs as elementary structural modules of de novo gene birth and protein evolution

C Papadopoulos, I Callebaut, JC Gelly, I Hatin… - Genome …, 2021 - genome.cshlp.org
The noncoding genome plays an important role in de novo gene birth and in the emergence
of genetic novelty. Nevertheless, how noncoding sequences' properties could promote the …