Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts

DA Opulente, AL LaBella, MC Harrison, JF Wolters… - Science, 2024 - science.org
Organisms exhibit extensive variation in ecological niche breadth, from very narrow
(specialists) to very broad (generalists). Two general paradigms have been proposed to …

[HTML][HTML] Mitochondrial genome diversity across the subphylum Saccharomycotina

JF Wolters, AL LaBella, DA Opulente, A Rokas… - Frontiers in …, 2023 - frontiersin.org
Introduction Eukaryotic life depends on the functional elements encoded by both the nuclear
genome and organellar genomes, such as those contained within the mitochondria. The …

Machine learning enables identification of an alternative yeast galactose utilization pathway

MC Harrison, EJ Ubbelohde… - Proceedings of the …, 2024 - National Acad Sciences
How genomic differences contribute to phenotypic differences is a major question in biology.
The recently characterized genomes, isolation environments, and qualitative patterns of …

Saccharomycotina yeasts defy long-standing macroecological patterns

KT David, MC Harrison, DA Opulente… - Proceedings of the …, 2024 - National Acad Sciences
The Saccharomycotina yeasts (“yeasts” hereafter) are a fungal clade of scientific, economic,
and medical significance. Yeasts are highly ecologically diverse, found across a broad …

[HTML][HTML] Selected Case studies on fastidious eukaryotic microorganisms: issues and investigation strategies

B Turchetti, A Bevivino, P Casella, C Coleine, GE Felis… - Diversity, 2023 - mdpi.com
The concept of fastidious microorganisms currently found in scientific literature is mainly
related to the difficulty of isolating/culturing/preserving bacteria. Eukaryotes are investigated …

Functional and evolutionary integration of a fungal gene with a bacterial operon

L Sun, KT David, JF Wolters, SD Karlen… - Molecular Biology …, 2024 - academic.oup.com
Siderophores are crucial for iron-scavenging in microorganisms. While many yeasts can
uptake siderophores produced by other organisms, they are typically unable to synthesize …

The cell morphological diversity of Saccharomycotina yeasts

CM Chavez, M Groenewald, AB Hulfachor… - FEMS Yeast …, 2024 - academic.oup.com
The∼ 1 200 known species in subphylum Saccharomycotina are a highly diverse clade of
unicellular fungi. During its lifecycle, a typical yeast exhibits multiple cell types with various …

Production of single cell protein rich in potassium by Nectaromyces rattus using biogas slurry and molasses

Y Yi, J Li, P Zhou, F Jia, Y Chen, D Li - Journal of Environmental …, 2024 - Elsevier
Single-cell protein (SCP) is a vital supplement for animal protein feed. This study utilized
biogas slurry and sugarcane molasses to ferment Nectaromyces rattus for the production of …

Phylogenomics reveals extensive misidentification of fungal strains from the genus Aspergillus

JL Steenwyk, C Balamurugan, HA Raja… - Microbiology …, 2024 - Am Soc Microbiol
Modern taxonomic classification is often based on phylogenetic analyses of a few molecular
markers, although single-gene studies are still common. Here, we leverage genome-scale …

[HTML][HTML] Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces

KO Barros, M Mader, DJ Krause, J Pangilinan… - … for Biofuels and …, 2024 - Springer
Background Cost-effective production of biofuels from lignocellulose requires the
fermentation of d-xylose. Many yeast species within and closely related to the genera …