▪ Abstract Comparative modeling predicts the three-dimensional structure of a given protein
sequence (target) based primarily on its alignment to one or more proteins of known …

PSI-BLAST is an iterative program to search a database for proteins with distant similarity to
a query sequence. We investigated over a dozen modifications to the methods used in PSI …

Dfam is an open access database of repetitive DNA families, sequence models, and
genome annotations. The 3.0–3.3 releases of Dfam (https://dfam. org) represent an evolution …

Comparative protein structure modeling predicts the three‐dimensional structure of a given
protein sequence (target) based primarily on its alignment to one or more proteins of known …

This book addresses some theoretical aspects of semisupervised learning (SSL). The book
is organized as a collection of different contributions of authors who are experts on this topic …

MADS-box transcription factors are key regulators of several plant development processes.
Analysis of the complete Arabidopsis genome sequence revealed 107 genes encoding …

Of the sequence comparison methods, profile-based methods perform with greater
selectively than those that use pairwise comparisons. Of the profile methods, hidden Markov …

A detailed overview of current research in kernel methods and their application to
computational biology. Modern machine learning techniques are proving to be extremely …

A systematic computational analysis of protein sequences containing known nuclear
domains led to the identification of 28 novel domain families. This represents a 26 …

Antibody repertoire diversity, potentially as high as 1011 unique molecules in a single
individual, confounds characterization by conventional sequence analyses. In this study, we …