[HTML][HTML] From molecules to genomic variations: Accelerating genome analysis via intelligent algorithms and architectures
We now need more than ever to make genome analysis more intelligent. We need to read,
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …
GenStore: A high-performance in-storage processing system for genome sequence analysis
Read mapping is a fundamental step in many genomics applications. It is used to identify
potential matches and differences between fragments (called reads) of a sequenced …
potential matches and differences between fragments (called reads) of a sequenced …
GenStore: A High-Performance and Energy-Efficient In-Storage Computing System for Genome Sequence Analysis
Read mapping is a fundamental, yet computationally-expensive step in many genomics
applications. It is used to identify potential matches and differences between fragments …
applications. It is used to identify potential matches and differences between fragments …
Going from molecules to genomic variations to scientific discovery: Intelligent algorithms and architectures for intelligent genome analysis
We now need more than ever to make genome analysis more intelligent. We need to read,
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …
analyze, and interpret our genomes not only quickly, but also accurately and efficiently …
Count2multiply: Reliable in-memory high-radix counting
Big data processing has exposed the limits of compute-centric hardware acceleration due to
the memory-to-processor bandwidth bottleneck. Consequently, there has been a shift …
the memory-to-processor bandwidth bottleneck. Consequently, there has been a shift …
Hardware Acceleration of DNA Read Alignment Programs: Challenges and Opportunities
PB Daniel, CA Ricardo, AB Ignacio, PO Miguel - Fractals, 2023 - World Scientific
The alignment or mapping of Deoxyribonucleic Acid (DNA) reads produced by the new
massively parallel sequencing machines is a fundamental initial step in the DNA analysis …
massively parallel sequencing machines is a fundamental initial step in the DNA analysis …
Co-design for energy efficient and fast genomic search: interleaved bloom filter on FPGA
Next-Generation Sequencing technologies generate a vast and exponentially increasing
amount of sequence data. The Interleaved Bloom Filter (IBF) is a novel indexing data …
amount of sequence data. The Interleaved Bloom Filter (IBF) is a novel indexing data …
GenStore: In-Storage Filtering of Genomic Data for High-Performance and Energy-Efficient Genome Analysis
Genome sequence analysis, which analyzes the DNA sequences of organisms, is important
for many applications in personalized medicine 1–8, outbreak tracing 9–14, and …
for many applications in personalized medicine 1–8, outbreak tracing 9–14, and …
GenoMiX: Accelerated Simultaneous Analysis of Human Genomics, Microbiome Metagenomics, and Viral Sequences
Personalized medicine tailors treatments based on the individual characteristics of each
patient. Recent work targets comprehensive analysis of patient samples that contain human …
patient. Recent work targets comprehensive analysis of patient samples that contain human …
Efficient Memory Layout for Pre-Alignment Filtering of Long DNA Reads Using Racetrack Memory
DNA sequence alignment is a fundamental and computationally expensive operation in
bioinformatics. Researchers have developed pre-alignment filters that effectively reduce the …
bioinformatics. Researchers have developed pre-alignment filters that effectively reduce the …