Short tree, long tree, right tree, wrong tree: new acquisition bias corrections for inferring SNP phylogenies
AD Leaché, BL Banbury, J Felsenstein… - Systematic …, 2015 - academic.oup.com
Single nucleotide polymorphisms (SNPs) are useful markers for phylogenetic studies owing
in part to their ubiquity throughout the genome and ease of collection. Restriction site …
in part to their ubiquity throughout the genome and ease of collection. Restriction site …
Species Delimitation Using Bayes Factors: Simulations and Application to the Sceloporus scalaris Species Group (Squamata: Phrynosomatidae)
Current molecular methods of species delimitation are limited by the types of species
delimitation models and scenarios that can be tested. Bayes factors allow for more flexibility …
delimitation models and scenarios that can be tested. Bayes factors allow for more flexibility …
Latitude, elevational climatic zonation and speciation in New World vertebrates
Many biodiversity hotspots are located in montane regions, especially in the tropics. A
possible explanation for this pattern is that the narrow thermal tolerances of tropical species …
possible explanation for this pattern is that the narrow thermal tolerances of tropical species …
Mitochondrial introgression and incomplete lineage sorting through space and time: phylogenetics of crotaphytid lizards
We investigate the roles of mitochondrial introgression and incomplete lineage sorting
during the phylogenetic history of crotaphytid lizards. Our Bayesian phylogenetic estimate …
during the phylogenetic history of crotaphytid lizards. Our Bayesian phylogenetic estimate …
Cryptic diversity and discordance in single‐locus species delimitation methods within horned lizards (Phrynosomatidae: Phrynosoma)
C Blair, RW Bryson Jr - Molecular Ecology Resources, 2017 - Wiley Online Library
Biodiversity reduction and loss continues to progress at an alarming rate, and thus, there is
widespread interest in utilizing rapid and efficient methods for quantifying and delimiting …
widespread interest in utilizing rapid and efficient methods for quantifying and delimiting …
Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: an example from squamate reptiles
Recently, as genome-scale data have become available for more organisms, the
development of phylogenetic markers from nuclear protein-coding loci (NPCL) has become …
development of phylogenetic markers from nuclear protein-coding loci (NPCL) has become …
Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrynosoma)
Lineage separation and divergence form a temporally extended process whereby
populations may diverge genetically, morphologically, or ecologically, and these contingent …
populations may diverge genetically, morphologically, or ecologically, and these contingent …
Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent
The wisent or European bison is the largest European herbivore and is completely cross-
fertile with its American relative. However, mtDNA genome of wisent is similar to that of …
fertile with its American relative. However, mtDNA genome of wisent is similar to that of …
Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing
Sequence capture and restriction site associated DNA sequencing (RADseq) are popular
methods for obtaining large numbers of loci for phylogenetic analysis. These methods are …
methods for obtaining large numbers of loci for phylogenetic analysis. These methods are …
Escaping from predators: A review of Neotropical lizards defence traits
RB Miranda, J Klaczko, JFR Tonini… - Ethology Ecology & …, 2023 - Taylor & Francis
Lizards are commonly preyed by a great variety of predators, including vertebrates and
invertebrates. Therefore, it is expected that lizards have developed a wide range of …
invertebrates. Therefore, it is expected that lizards have developed a wide range of …