Weak baselines and reporting biases lead to overoptimism in machine learning for fluid-related partial differential equations
N McGreivy, A Hakim - Nature Machine Intelligence, 2024 - nature.com
One of the most promising applications of machine learning in computational physics is to
accelerate the solution of partial differential equations (PDEs). The key objective of machine …
accelerate the solution of partial differential equations (PDEs). The key objective of machine …
R/qtl2: software for mapping quantitative trait loci with high-dimensional data and multiparent populations
R/qtl2 is an interactive software environment for mapping quantitative trait loci (QTL) in
experimental populations. The R/qtl2 software expands the scope of the widely-used R/qtl …
experimental populations. The R/qtl2 software expands the scope of the widely-used R/qtl …
[HTML][HTML] Stan: A probabilistic programming language
B Carpenter, A Gelman, MD Hoffman… - Journal of statistical …, 2017 - ncbi.nlm.nih.gov
Stan is a probabilistic programming language for specifying statistical models. A Stan
program imperatively defines a log probability function over parameters conditioned on …
program imperatively defines a log probability function over parameters conditioned on …
Compiler support for sparse tensor computations in MLIR
Sparse tensors arise in problems in science, engineering, machine learning, and data
analytics. Programs that operate on such tensors can exploit sparsity to reduce storage …
analytics. Programs that operate on such tensors can exploit sparsity to reduce storage …
Simulation-based Bayesian analysis
M Plummer - Annual Review of Statistics and Its Application, 2023 - annualreviews.org
I consider the development of Markov chain Monte Carlo (MCMC) methods, from late-1980s
Gibbs sampling to present-day gradient-based methods and piecewise-deterministic Markov …
Gibbs sampling to present-day gradient-based methods and piecewise-deterministic Markov …
PyPose: A library for robot learning with physics-based optimization
Deep learning has had remarkable success in robotic perception, but its data-centric nature
suffers when it comes to generalizing to ever-changing environments. By contrast, physics …
suffers when it comes to generalizing to ever-changing environments. By contrast, physics …
SPIRAL: Extreme performance portability
In this paper, we address the question of how to automatically map computational kernels to
highly efficient code for a wide range of computing platforms and establish the correctness of …
highly efficient code for a wide range of computing platforms and establish the correctness of …
Affine body dynamics: Fast, stable & intersection-free simulation of stiff materials
Simulating stiff materials in applications where deformations are either not significant or can
safely be ignored is a pivotal task across fields. Rigid body modeling has thus long …
safely be ignored is a pivotal task across fields. Rigid body modeling has thus long …
The Stan math library: Reverse-mode automatic differentiation in C++
As computational challenges in optimization and statistical inference grow ever harder,
algorithms that utilize derivatives are becoming increasingly more important. The …
algorithms that utilize derivatives are becoming increasingly more important. The …
High-order differentiable autoencoder for nonlinear model reduction
This paper provides a new avenue for exploiting deep neural networks to improve physics-
based simulation. Specifically, we integrate the classic Lagrangian mechanics with a deep …
based simulation. Specifically, we integrate the classic Lagrangian mechanics with a deep …