Delivery technologies for genome editing

H Yin, KJ Kauffman, DG Anderson - Nature reviews Drug discovery, 2017 - nature.com
With the recent development of CRISPR technology, it is becoming increasingly easy to
engineer the genome. Genome-editing systems based on CRISPR, as well as transcription …

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering

T Gaj, CA Gersbach, CF Barbas - Trends in biotechnology, 2013 - cell.com
Zinc-finger nucleases (ZFNs) and transcription activator-like effector nucleases (TALENs)
comprise a powerful class of tools that are redefining the boundaries of biological research …

[PDF][PDF] Targeted A-to-G base editing in human mitochondrial DNA with programmable deaminases

SI Cho, S Lee, YG Mok, K Lim, J Lee, JM Lee, E Chung… - Cell, 2022 - cell.com
Mitochondrial DNA (mtDNA) editing paves the way for disease modeling of mitochondrial
genetic disorders in cell lines and animals and also for the treatment of these diseases in the …

Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells

D Kim, S Bae, J Park, E Kim, S Kim, HR Yu, J Hwang… - Nature …, 2015 - nature.com
Although RNA-guided genome editing via the CRISPR-Cas9 system is now widely used in
biomedical research, genome-wide target specificities of Cas9 nucleases remain …

Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases

S Bae, J Park, JS Kim - Bioinformatics, 2014 - academic.oup.com
The Type II clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system
is an adaptive immune response in prokaryotes, protecting host cells against invading …

Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins

S Kim, D Kim, SW Cho, J Kim, JS Kim - Genome research, 2014 - genome.cshlp.org
RNA-guided engineered nucleases (RGENs) derived from the prokaryotic adaptive immune
system known as CRISPR (clustered, regularly interspaced, short palindromic repeat)/Cas …

Re-evaluation of the roles of DROSHA, Exportin 5, and DICER in microRNA biogenesis

YK Kim, B Kim, VN Kim - Proceedings of the National …, 2016 - National Acad Sciences
Biogenesis of canonical microRNAs (miRNAs) involves multiple steps: nuclear processing of
primary miRNA (pri-miRNA) by DROSHA, nuclear export of precursor miRNA (pre-miRNA) …

Mitochondrial DNA editing in mice with DddA-TALE fusion deaminases

H Lee, S Lee, G Baek, A Kim, BC Kang, H Seo… - Nature …, 2021 - nature.com
DddA-derived cytosine base editors (DdCBEs), composed of the split interbacterial toxin
DddAtox, transcription activator-like effector (TALE), and uracil glycosylase inhibitor (UGI) …

A guide to genome engineering with programmable nucleases

H Kim, JS Kim - Nature Reviews Genetics, 2014 - nature.com
Programmable nucleases—including zinc-finger nucleases (ZFNs), transcription activator-
like effector nucleases (TALENs) and RNA-guided engineered nucleases (RGENs) derived …

Precision mitochondrial DNA editing with high-fidelity DddA-derived base editors

S Lee, H Lee, G Baek, JS Kim - Nature Biotechnology, 2023 - nature.com
Bacterial toxin DddA-derived cytosine base editors (DdCBEs)—composed of split DddAtox
(a cytosine deaminase specific to double-stranded DNA), custom-designed TALE …