The interplay between chromatin, transcription factors and genes generates complex
regulatory circuits that can be represented as gene regulatory networks (GRNs). The study …

Inferring gene regulatory networks (GRNs) is a fundamental challenge in biology that aims
to unravel the complex relationships between genes and their regulators. Deciphering these …

The 3-dimensional nature of chromatin architecture plays crucial roles in regulating gene
expression in development, homeostasis, and disease. Until recently, however …

Inference of gene regulatory networks (GRNs) can reveal cell state transitions from single-
cell genomics data. However, obstacles to temporal inference from snapshot data are …

Acute kidney injury (AKI) causes epithelial damage followed by subsequent repair. While
successful repair restores kidney function, this process is often incomplete and can lead to …