Re-evaluating prokaryotic species
There is no widely accepted concept of species for prokaryotes, and assignment of isolates
to species is based on measures of phenotypic or genome similarity. The current methods …
to species is based on measures of phenotypic or genome similarity. The current methods …
[HTML][HTML] The genus Bifidobacterium: from genomics to functionality of an important component of the mammalian gut microbiota
G Alessandri, D van Sinderen, M Ventura - Computational and Structural …, 2021 - Elsevier
Members of the genus Bifidobacterium are dominant and symbiotic inhabitants of the
mammalian gastrointestinal tract. Being vertically transmitted, bifidobacterial host …
mammalian gastrointestinal tract. Being vertically transmitted, bifidobacterial host …
Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica
Salmonella enterica subspecies enterica is traditionally subdivided into serovars by
serological and nutritional characteristics. We used Multilocus Sequence Typing (MLST) to …
serological and nutritional characteristics. We used Multilocus Sequence Typing (MLST) to …
Guidelines for the validation and application of typing methods for use in bacterial epidemiology
A Van Belkum, PT Tassios, L Dijkshoorn… - Clinical Microbiology …, 2007 - Wiley Online Library
For bacterial typing to be useful, the development, validation and appropriate application of
typing methods must follow unified criteria. Over a decade ago, ESGEM, the ESCMID …
typing methods must follow unified criteria. Over a decade ago, ESGEM, the ESCMID …
Bacterial strain typing in the genomic era
W Li, D Raoult, PE Fournier - FEMS microbiology reviews, 2009 - academic.oup.com
Bacterial strain typing, or identifying bacteria at the strain level, is particularly important for
diagnosis, treatment, and epidemiological surveillance of bacterial infections. This is …
diagnosis, treatment, and epidemiological surveillance of bacterial infections. This is …
Re-addressing the biosafety issues of plant growth promoting rhizobacteria
To promote agronomic sustainability, extensive research is being carried out globally,
investigating biofertilizer development. Recently, it has been realized that some …
investigating biofertilizer development. Recently, it has been realized that some …
Co-evolutionary aspects of human colonisation and infection by Staphylococcus aureus
A van Belkum, DC Melles, J Nouwen… - Infection, Genetics and …, 2009 - Elsevier
Although Staphylococcus aureus is a bacterial species of medical significance, only
approximately 30% of all humans carry staphylococcal cells persistently but …
approximately 30% of all humans carry staphylococcal cells persistently but …
Addition of neuA, the gene encoding N-acylneuraminate cytidylyl transferase, increases the discriminatory ability of the consensus sequence-based scheme for typing …
The standard sequence-based method for the typing of Legionella pneumophila serogroup
1 strains was extended by using the gspA and neuA alleles. The use of neuA as a seventh …
1 strains was extended by using the gspA and neuA alleles. The use of neuA as a seventh …
Streamlining and simplification of microbial genome architecture
M Lynch - Annu. Rev. Microbiol., 2006 - annualreviews.org
The genomes of unicellular species, particularly prokaryotes, are greatly reduced in size and
simplified in terms of gene structure relative to those of multicellular eukaryotes. Arguments …
simplified in terms of gene structure relative to those of multicellular eukaryotes. Arguments …
Salmonella nomenclature in the genomic era: a time for change
MA Chattaway, GC Langridge, J Wain - Scientific reports, 2021 - nature.com
Salmonella enterica nomenclature has evolved over the past one hundred years into a
highly sophisticated naming convention based on the recognition of antigens by specific …
highly sophisticated naming convention based on the recognition of antigens by specific …