Re-evaluating prokaryotic species

D Gevers, FM Cohan, JG Lawrence, BG Spratt… - Nature Reviews …, 2005 - nature.com
There is no widely accepted concept of species for prokaryotes, and assignment of isolates
to species is based on measures of phenotypic or genome similarity. The current methods …

[HTML][HTML] The genus Bifidobacterium: from genomics to functionality of an important component of the mammalian gut microbiota

G Alessandri, D van Sinderen, M Ventura - Computational and Structural …, 2021 - Elsevier
Members of the genus Bifidobacterium are dominant and symbiotic inhabitants of the
mammalian gastrointestinal tract. Being vertically transmitted, bifidobacterial host …

Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica

M Achtman, J Wain, FX Weill, S Nair, Z Zhou… - PLoS …, 2012 - journals.plos.org
Salmonella enterica subspecies enterica is traditionally subdivided into serovars by
serological and nutritional characteristics. We used Multilocus Sequence Typing (MLST) to …

Guidelines for the validation and application of typing methods for use in bacterial epidemiology

A Van Belkum, PT Tassios, L Dijkshoorn… - Clinical Microbiology …, 2007 - Wiley Online Library
For bacterial typing to be useful, the development, validation and appropriate application of
typing methods must follow unified criteria. Over a decade ago, ESGEM, the ESCMID …

Bacterial strain typing in the genomic era

W Li, D Raoult, PE Fournier - FEMS microbiology reviews, 2009 - academic.oup.com
Bacterial strain typing, or identifying bacteria at the strain level, is particularly important for
diagnosis, treatment, and epidemiological surveillance of bacterial infections. This is …

Re-addressing the biosafety issues of plant growth promoting rhizobacteria

C Keswani, O Prakash, N Bharti, JI Vílchez… - Science of the Total …, 2019 - Elsevier
To promote agronomic sustainability, extensive research is being carried out globally,
investigating biofertilizer development. Recently, it has been realized that some …

Co-evolutionary aspects of human colonisation and infection by Staphylococcus aureus

A van Belkum, DC Melles, J Nouwen… - Infection, Genetics and …, 2009 - Elsevier
Although Staphylococcus aureus is a bacterial species of medical significance, only
approximately 30% of all humans carry staphylococcal cells persistently but …

Addition of neuA, the gene encoding N-acylneuraminate cytidylyl transferase, increases the discriminatory ability of the consensus sequence-based scheme for typing …

S Ratzow, V Gaia, JH Helbig, NK Fry… - Journal of Clinical …, 2007 - Am Soc Microbiol
The standard sequence-based method for the typing of Legionella pneumophila serogroup
1 strains was extended by using the gspA and neuA alleles. The use of neuA as a seventh …

Streamlining and simplification of microbial genome architecture

M Lynch - Annu. Rev. Microbiol., 2006 - annualreviews.org
The genomes of unicellular species, particularly prokaryotes, are greatly reduced in size and
simplified in terms of gene structure relative to those of multicellular eukaryotes. Arguments …

Salmonella nomenclature in the genomic era: a time for change

MA Chattaway, GC Langridge, J Wain - Scientific reports, 2021 - nature.com
Salmonella enterica nomenclature has evolved over the past one hundred years into a
highly sophisticated naming convention based on the recognition of antigens by specific …