Control of DNA replication timing in the 3D genome
The 3D organization of mammalian chromatin was described more than 30 years ago by
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …
visualizing sites of DNA synthesis at different times during the S phase of the cell cycle …
[HTML][HTML] Chromosome conformation capture and beyond: toward an integrative view of chromosome structure and function
Rapidly developing technologies have recently fueled an exciting era of discovery in the
field of chromosome structure and nuclear organization. In addition to chromosome …
field of chromosome structure and nuclear organization. In addition to chromosome …
Mammalian DNA replication timing
AE Vouzas, DM Gilbert - Cold Spring Harbor …, 2021 - cshperspectives.cshlp.org
Immediately following the discovery of the structure of DNA and the semi-conservative
replication of the parental DNA sequence into two new DNA strands, it became apparent …
replication of the parental DNA sequence into two new DNA strands, it became apparent …
[HTML][HTML] Three-dimensional nuclear organisation and the DNA replication timing program
N Chen, SCB Buonomo - Current opinion in structural biology, 2023 - Elsevier
In eukaryotic cells, genome duplication is temporally organised according to a program
referred to as the replication-timing (RT) program. The RT of individual genomic domains …
referred to as the replication-timing (RT) program. The RT of individual genomic domains …
Replication timing and transcriptional control: beyond cause and effect—part IV
AE Vouzas, DM Gilbert - Current opinion in genetics & development, 2023 - Elsevier
Decades of work on the spatiotemporal organization of mammalian DNA replication timing
(RT) continues to unveil novel correlations with aspects of transcription and chromatin …
(RT) continues to unveil novel correlations with aspects of transcription and chromatin …
[HTML][HTML] Nuclear organisation and replication timing are coupled through RIF1–PP1 interaction
S Gnan, IM Flyamer, KN Klein, E Castelli… - Nature …, 2021 - nature.com
Three-dimensional genome organisation and replication timing are known to be correlated,
however, it remains unknown whether nuclear architecture overall plays an instructive role …
however, it remains unknown whether nuclear architecture overall plays an instructive role …
[HTML][HTML] Computational stem cell biology: open questions and guiding principles
Computational biology is enabling an explosive growth in our understanding of stem cells
and our ability to use them for disease modeling, regenerative medicine, and drug …
and our ability to use them for disease modeling, regenerative medicine, and drug …
Quantifying chromosome structural reorganizations during differentiation, reprogramming, and transdifferentiation
We developed a nonequilibrium model to study chromosome structural reorganizations
within a simplified cell developmental system. From the chromosome structural perspective …
within a simplified cell developmental system. From the chromosome structural perspective …
[HTML][HTML] A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships
Background Chromatin contacts are essential for gene-expression regulation; however,
obtaining a high-resolution genome-wide chromatin contact map is still prohibitively …
obtaining a high-resolution genome-wide chromatin contact map is still prohibitively …
Chromosome compartmentalization: causes, changes, consequences, and conundrums
The spatial segregation of the genome into compartments is a major feature of 3D genome
organization. New data on mammalian chromosome organization across different conditions …
organization. New data on mammalian chromosome organization across different conditions …