Designing drugs when there is low data availability: one-shot learning and other approaches to face the issues of a long-term concern
GC Verissimo, MSM Serafim… - Expert Opinion on …, 2022 - Taylor & Francis
Introduction Modern drug discovery is generally accessed by useful information from
previous large databases or uncovering novel data. The lack of biological and/or chemical …
previous large databases or uncovering novel data. The lack of biological and/or chemical …
Curse and Blessing of Non‐Proteinogenic Parts in Computational Enzyme Engineering
KT Korbeld, MJLJ Fürst - ChemBioChem, 2023 - Wiley Online Library
Enzyme engineering aims to improve or install a new function in biocatalysts for applications
ranging from chemical synthesis to biomedicine. For decades, computational techniques …
ranging from chemical synthesis to biomedicine. For decades, computational techniques …
Deep generative model for therapeutic targets using transcriptomic disease-associated data—USP7 case study
The generation of candidate hit molecules with the potential to be used in cancer treatment
is a challenging task. In this context, computational methods based on deep learning have …
is a challenging task. In this context, computational methods based on deep learning have …
Identification of LASSBio-1945 as an inhibitor of SARS-CoV-2 main protease (M PRO) through in silico screening supported by molecular docking and a fragment …
In December 2019, an infectious disease was detected in Wuhan, China, caused by a new
pathogenic coronavirus, named SARS-CoV-2. It spread very rapidly, and on March 11th of …
pathogenic coronavirus, named SARS-CoV-2. It spread very rapidly, and on March 11th of …
Fragment localized molecular orbitals
T Giovannini, H Koch - Journal of Chemical Theory and …, 2022 - ACS Publications
We introduce the concept of fragment localized molecular orbitals (FLMOs), which are
Hartree–Fock molecular orbitals localized in specific fragments constituting a molecular …
Hartree–Fock molecular orbitals localized in specific fragments constituting a molecular …
Artificial intelligence for prediction of biological activities and generation of molecular hits using stereochemical information
In this work, we develop a method for generating targeted hit compounds by applying deep
reinforcement learning and attention mechanisms to predict binding affinity against a …
reinforcement learning and attention mechanisms to predict binding affinity against a …
Discovery of Oral Anticancer 1,2-Bis(hydroxymethyl)benzo[g]pyrrolo[2,1-a]phthalazine Hybrids That Inhibit Angiogenesis and Induce DNA Cross-Links
Designing hybrid molecules with dual functions is one approach to improve the therapeutic
efficacy of combination treatment. We have previously conjugated phthalazine and bis …
efficacy of combination treatment. We have previously conjugated phthalazine and bis …
FOCUS on NOD2: Advancing IBD Drug Discovery with a User-Informed Machine Learning Framework
R Choudhary, R Mahadevan - ACS Medicinal Chemistry Letters, 2024 - ACS Publications
In this study, we introduce the Framework for Optimized Customizable User-Informed
Synthesis (FOCUS), a generative machine learning model tailored for drug discovery …
Synthesis (FOCUS), a generative machine learning model tailored for drug discovery …
[HTML][HTML] Kohn–Sham fragment energy decomposition analysis
T Giovannini - The Journal of Chemical Physics, 2024 - pubs.aip.org
We introduce the concept of Kohn–Sham fragment localized molecular orbitals (KS-FLMOs),
which are Kohn–Sham molecular orbitals (MOs) localized in specific fragments constituting …
which are Kohn–Sham molecular orbitals (MOs) localized in specific fragments constituting …
Coumarins as Potential Antiprotozoal Agents: Biological Activities and Mechanism of Action
EJT Sierra, CF Cordeiro, L de Figueiredo Diniz… - Revista Brasileira de …, 2021 - Springer
Since the discovery of dicoumarol (a coumarin-based anticoagulant) in 1940, coumarins
have been found to possess a range of biological activities such as antimicrobial, anti …
have been found to possess a range of biological activities such as antimicrobial, anti …