The Paf1 complex: a keystone of nuclear regulation operating at the interface of transcription and chromatin
The regulation of transcription by RNA polymerase II is closely intertwined with the
regulation of chromatin structure. A host of proteins required for the disassembly …
regulation of chromatin structure. A host of proteins required for the disassembly …
Pause & go: from the discovery of RNA polymerase pausing to its functional implications
A Mayer, HM Landry, LS Churchman - Current opinion in cell biology, 2017 - Elsevier
The synthesis of nascent RNA is a discontinuous process in which phases of productive
elongation by RNA polymerase are interrupted by frequent pauses. Transcriptional pausing …
elongation by RNA polymerase are interrupted by frequent pauses. Transcriptional pausing …
Transcription and splicing: A two‐way street
RNA synthesis by RNA polymerase II and RNA processing are closely coupled during the
transcription cycle of protein‐coding genes. This coupling affords opportunities for quality …
transcription cycle of protein‐coding genes. This coupling affords opportunities for quality …
[HTML][HTML] Telomere-specific regulation of TERRA and its impact on telomere stability
J Rivosecchi, K Jurikova, E Cusanelli - Seminars in Cell & Developmental …, 2024 - Elsevier
TERRA is a class of telomeric repeat-containing RNAs that are expressed from telomeres in
multiple organisms. TERRA transcripts play key roles in telomere maintenance and their …
multiple organisms. TERRA transcripts play key roles in telomere maintenance and their …
Structural heterogeneity in the intrinsically disordered RNA polymerase II C-terminal domain
RNA polymerase II contains a repetitive, intrinsically disordered, C-terminal domain (CTD)
composed of heptads of the consensus sequence YSPTSPS. The CTD is heavily …
composed of heptads of the consensus sequence YSPTSPS. The CTD is heavily …
Beyond the trinity of ATM, ATR, and DNA-PK: multiple kinases shape the DNA damage response in concert with RNA metabolism
K Burger, RF Ketley, M Gullerova - Frontiers in Molecular Biosciences, 2019 - frontiersin.org
Our genome is constantly exposed to endogenous and exogenous sources of DNA damage
resulting in various alterations of the genetic code. DNA double-strand breaks (DSBs) are …
resulting in various alterations of the genetic code. DNA double-strand breaks (DSBs) are …
BORDER proteins protect expression of neighboring genes by promoting 3′ Pol II pausing in plants
X Yu, PGP Martin, SD Michaels - Nature communications, 2019 - nature.com
Ensuring that one gene's transcription does not inappropriately affect the expression of its
neighbors is a fundamental challenge to gene regulation in a genomic context. In plants …
neighbors is a fundamental challenge to gene regulation in a genomic context. In plants …
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
LM Appel, V Franke, M Bruno, I Grishkovskaya… - Nature …, 2021 - nature.com
The C-terminal domain (CTD) of the largest subunit of RNA polymerase II (Pol II) is a
regulatory hub for transcription and RNA processing. Here, we identify PHD-finger protein 3 …
regulatory hub for transcription and RNA processing. Here, we identify PHD-finger protein 3 …
SRSF protein kinase 1 modulates RAN translation and suppresses CGG repeat toxicity
I Malik, YJ Tseng, SE Wright, K Zheng… - EMBO molecular …, 2021 - embopress.org
Transcribed CGG repeat expansions cause neurodegeneration in Fragile X‐associated
tremor/ataxia syndrome (FXTAS). CGG repeat RNAs sequester RNA‐binding proteins …
tremor/ataxia syndrome (FXTAS). CGG repeat RNAs sequester RNA‐binding proteins …
Extensive 5′-surveillance guards against non-canonical NAD-caps of nuclear mRNAs in yeast
Y Zhang, D Kuster, T Schmidt, D Kirrmaier… - Nature …, 2020 - nature.com
The ubiquitous redox coenzyme nicotinamide adenine dinucleotide (NAD) acts as a non-
canonical cap structure on prokaryotic and eukaryotic ribonucleic acids. Here we find that in …
canonical cap structure on prokaryotic and eukaryotic ribonucleic acids. Here we find that in …