A Galaxy of informatics resources for MS-based proteomics

S Mehta, M Bernt, M Chambers, M Fahrner… - Expert Review of …, 2023 - Taylor & Francis
Introduction Continuous advances in mass spectrometry (MS) technologies have enabled
deeper and more reproducible proteome characterization and a better understanding of …

[HTML][HTML] An emerging frontier in intercellular communication: extracellular vesicles in regeneration

PN Avalos, DJ Forsthoefel - Frontiers in Cell and Developmental …, 2022 - frontiersin.org
Regeneration requires cellular proliferation, differentiation, and other processes that are
regulated by secreted cues originating from cells in the local environment. Recent studies …

Imaging mass spectrometry for metabolites: technical progress, multimodal imaging, and biological interactions

YN Ho, LJ Shu, YL Yang - Wiley Interdisciplinary Reviews …, 2017 - Wiley Online Library
Imaging mass spectrometry (IMS) allows the study of the spatial distribution of small
molecules in biological samples. IMS is able to identify and quantify chemicals in situ from …

The miR-124 family of microRNAs is crucial for regeneration of the brain and visual system in the planarian Schmidtea mediterranea

V Sasidharan, S Marepally, SA Elliott, S Baid… - …, 2017 - journals.biologists.com
Brain regeneration in planarians is mediated by precise spatiotemporal control of gene
expression and is crucial for multiple aspects of neurogenesis. However, the mechanisms …

Beyond the behavioural phenotype: Uncovering mechanistic foundations in aquatic eco-neurotoxicology

D Wlodkowic, A Bownik, C Leitner, D Stengel… - Science of The Total …, 2022 - Elsevier
During the last decade, there has been an increase in awareness of how anthropogenic
pollution can alter behavioural traits of diverse aquatic organisms. Apart from understanding …

Digestion-free analysis of peptides from 30-year-old formalin-fixed, paraffin-embedded tissue by mass spectrometry imaging

MRL Paine, SR Ellis, D Maloney, RMA Heeren… - Analytical …, 2018 - ACS Publications
Formalin-fixed neuroendocrine tissues from American cockroaches (Periplaneta americana)
embedded in paraffin more than 30 years ago were recently analyzed by matrix-assisted …

Neuropeptidomics: improvements in mass spectrometry imaging analysis and recent advancements

NQ Vu, K DeLaney, L Li - Current Protein and Peptide Science, 2021 - ingentaconnect.com
Neuropeptides are an important class of endogenous peptides in the nervous system that
regulate physiological functions such as feeding, glucose homeostasis, pain, memory …

Mass spectrometry measurements of neuropeptides: from identification to quantitation

EA De La Toba, SE Bell, EV Romanova… - Annual Review of …, 2022 - annualreviews.org
Neuropeptides (NPs), a unique class of neuronal signaling molecules, participate in a
variety of physiological processes and diseases. Quantitative measurements of NPs provide …

[HTML][HTML] SMYD3 promotes cell cycle progression by inducing cyclin D3 transcription and stabilizing the cyclin D1 protein in medulloblastoma

S Asuthkar, S Venkataraman, J Avilala, K Shishido… - Cancers, 2022 - mdpi.com
Simple Summary Medulloblastoma is the most common malignant pediatric brain tumor and
is classified into four molecular subgroups: Wnt, Shh, Group 3, and Group 4. Of these …

[HTML][HTML] Analysis of Fox genes in Schmidtea mediterranea reveals new families and a conserved role of Smed-foxO in controlling cell death

E Pascual-Carreras, C Herrera-Úbeda, M Rosselló… - Scientific reports, 2021 - nature.com
The forkhead box (Fox) genes encode transcription factors that control several key aspects
of development. Present in the ancestor of all eukaryotes, Fox genes underwent several …