Atomistic simulations of membrane ion channel conduction, gating, and modulation

E Flood, C Boiteux, B Lev, I Vorobyov… - Chemical …, 2019 - ACS Publications
Membrane ion channels are the fundamental electrical components in the nervous system.
Recent developments in X-ray crystallography and cryo-EM microscopy have revealed what …

Voltage sensors of a Na+ channel dissociate from the pore domain and form inter-channel dimers in the resting state

A Sumino, T Sumikama, M Shibata, K Irie - Nature Communications, 2023 - nature.com
Understanding voltage-gated sodium (Nav) channels is significant since they generate
action potential. Nav channels consist of a pore domain (PD) and a voltage sensor domain …

The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel

K Irie, Y Oda, T Sumikama, A Oshima… - Nature …, 2023 - nature.com
Divalent cation block is observed in various tetrameric ion channels. For blocking, a divalent
cation is thought to bind in the ion pathway of the channel, but such block has not yet been …

Voltage sensor dynamics of a bacterial voltage-gated sodium channel NavAb reveal three conformational states

S Han, J Vance, S Jones, J DeCata, K Tran… - Journal of Biological …, 2023 - ASBMB
High-resolution structures of voltage-gated sodium channels (Nav) were first obtained from a
prokaryotic ortholog NavAb, which provided important mechanistic insights into Na+ …

A native prokaryotic voltage-dependent calcium channel with a novel selectivity filter sequence

T Shimomura, Y Yonekawa, H Nagura, M Tateyama… - Elife, 2020 - elifesciences.org
Voltage-dependent Ca2+ channels (Cavs) are indispensable for coupling action potentials
with Ca2+ signaling in living organisms. The structure of Cavs is similar to that of voltage …

A hypothetical molecular mechanism for TRPV1 activation that invokes rotation of an S6 asparagine

MA Kasimova, AT Yazici, Y Yudin, D Granata… - Journal of General …, 2018 - rupress.org
The transient receptor potential channel vanilloid type 1 (TRPV1) is activated by a variety of
endogenous and exogenous stimuli and is involved in nociception and body temperature …

Molecular Dynamics of Ion Conduction through the Selectivity Filter of the NaVAb Sodium Channel

KM Callahan, B Roux - The Journal of Physical Chemistry B, 2018 - ACS Publications
The determination of the atomic structures of voltage-gated bacterial sodium channels using
X-ray crystallography has provided a first view of this family of membrane proteins …

An open state of a voltage-gated sodium channel involving a π-helix and conserved pore-facing asparagine

K Choudhury, MA Kasimova, S McComas, RJ Howard… - Biophysical …, 2022 - cell.com
Voltage-gated sodium (Nav) channels play critical roles in propagating action potentials and
otherwise manipulating ionic gradients in excitable cells. These channels open in response …

An α–π transition in S6 shapes the conformational cycle of the bacterial sodium channel NavAb

K Choudhury, RJ Howard, L Delemotte - Journal of General Physiology, 2022 - rupress.org
Voltage-gated sodium channels play an important role in electrical signaling in excitable
cells. In response to changes in membrane potential, they cycle between nonconducting …

The insights into calcium ion selectivity provided by ancestral prokaryotic ion channels

K Irie - Biophysics and Physicobiology, 2021 - jstage.jst.go.jp
Prokaryotic channels play an important role in the structural biology of ion channels. At the
end of the 20 th century, the first structure of a prokaryotic ion channel was revealed …