Multi-omics data integration, interpretation, and its application

I Subramanian, S Verma, S Kumar… - … and biology insights, 2020 - journals.sagepub.com
To study complex biological processes holistically, it is imperative to take an integrative
approach that combines multi-omics data to highlight the interrelationships of the involved …

Context is everything: aneuploidy in cancer

U Ben-David, A Amon - Nature Reviews Genetics, 2020 - nature.com
Cancer is driven by multiple types of genetic alterations, which range in size from point
mutations to whole-chromosome gains and losses, known as aneuploidy. Chromosome …

The dynamic and stress-adaptive signaling hub of 14-3-3: emerging mechanisms of regulation and context-dependent protein–protein interactions

KL Pennington, TY Chan, MP Torres, JL Andersen - Oncogene, 2018 - nature.com
3-3 proteins are a family of structurally similar phospho-binding proteins that regulate
essentially every major cellular function. Decades of research on 14-3-3s have revealed a …

Recent advances in biosensor development for the detection of cancer biomarkers

VSA Jayanthi, AB Das, U Saxena - Biosensors and Bioelectronics, 2017 - Elsevier
Cancer is the second largest disease throughout the world with an increasing mortality rate
over the past few years. The patient's survival rate is uncertain due to the limitations of …

Autophagy-mediated apoptosis eliminates aneuploid cells in a mouse model of chromosome mosaicism

S Singla, LK Iwamoto-Stohl, M Zhu… - Nature …, 2020 - nature.com
The high incidence of aneuploidy in the embryo is considered the principal cause for low
human fecundity. However, the prevalence of aneuploidy dramatically declines as …

Portrait of the PI3K/AKT pathway in colorectal cancer

SA Danielsen, PW Eide, A Nesbakken, T Guren… - … et Biophysica Acta (BBA …, 2015 - Elsevier
Abstract PI3K/AKT signaling leads to reduced apoptosis, stimulates cell growth and
increases proliferation. Under normal conditions, PI3K/AKT activation is tightly controlled …

A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis

DM Witten, R Tibshirani, T Hastie - Biostatistics, 2009 - academic.oup.com
We present a penalized matrix decomposition (PMD), a new framework for computing a rank-
K approximation for a matrix. We approximate the matrix X as, where dk, uk, and vk minimize …

Somatic mutations affect key pathways in lung adenocarcinoma

L Ding, G Getz, DA Wheeler, ER Mardis, MD McLellan… - Nature, 2008 - nature.com
Determining the genetic basis of cancer requires comprehensive analyses of large
collections of histopathologically well-classified primary tumours. Here we report the results …

[HTML][HTML] Principles of cancer therapy: oncogene and non-oncogene addiction

J Luo, NL Solimini, SJ Elledge - Cell, 2009 - cell.com
Cancer is a complex collection of distinct genetic diseases united by common hallmarks.
Here, we expand upon the classic hallmarks to include the stress phenotypes of …

[HTML][HTML] A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes

RM Neve, K Chin, J Fridlyand, J Yeh, FL Baehner… - Cancer cell, 2006 - cell.com
Recent studies suggest that thousands of genes may contribute to breast cancer
pathophysiologies when deregulated by genomic or epigenomic events. Here, we describe …