Synergy between sequence and size in large-scale genomics

TR Gregory - Nature Reviews Genetics, 2005 - nature.com
Until recently the study of individual DNA sequences and of total DNA content (the C-value)
sat at opposite ends of the spectrum in genome biology. For gene sequencers, the vast …

Evolutionary stasis: the stable chromosomes of birds

H Ellegren - Trends in ecology & evolution, 2010 - cell.com
Evolution at the molecular level is manifested in a variety of types of change in DNA
sequences, including changes in the structure and organisation of chromosomes. However …

Evolutionary analysis of a complete chicken genome

Z Huang, Z Xu, H Bai, Y Huang… - Proceedings of the …, 2023 - National Acad Sciences
Microchromosomes are prevalent in nonmammalian vertebrates [PD Waters et al., Proc.
Natl. Acad. Sci. USA 118 (2021)], but a few of them are missing in bird genome assemblies …

Deeply conserved synteny resolves early events in vertebrate evolution

O Simakov, F Marlétaz, JX Yue, B O'Connell… - Nature ecology & …, 2020 - nature.com
Although it is widely believed that early vertebrate evolution was shaped by ancient whole-
genome duplications, the number, timing and mechanism of these events remain elusive …

Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution

Y Nakatani, P Shingate, V Ravi, NE Pillai… - Nature …, 2021 - nature.com
Ancient polyploidization events have had a lasting impact on vertebrate genome structure,
organization and function. Some key questions regarding the number of ancient …

Elephant shark genome provides unique insights into gnathostome evolution

B Venkatesh, AP Lee, V Ravi, AK Maurya, MM Lian… - Nature, 2014 - nature.com
The emergence of jawed vertebrates (gnathostomes) from jawless vertebrates was
accompanied by major morphological and physiological innovations, such as hinged jaws …

[HTML][HTML] Platypus and echidna genomes reveal mammalian biology and evolution

Y Zhou, L Shearwin-Whyatt, J Li, Z Song, T Hayakawa… - Nature, 2021 - nature.com
Egg-laying mammals (monotremes) are the only extant mammalian outgroup to therians
(marsupial and eutherian animals) and provide key insights into mammalian evolution 1, 2 …

Microchromosomes are building blocks of bird, reptile, and mammal chromosomes

PD Waters, HR Patel, A Ruiz-Herrera… - Proceedings of the …, 2021 - National Acad Sciences
Microchromosomes, once considered unimportant shreds of the chicken genome, are gene-
rich elements with a high GC content and few transposable elements. Their origin has been …

The genome of the green anole lizard and a comparative analysis with birds and mammals

J Alföldi, F Di Palma, M Grabherr, C Williams, L Kong… - Nature, 2011 - nature.com
The evolution of the amniotic egg was one of the great evolutionary innovations in the
history of life, freeing vertebrates from an obligatory connection to water and thus permitting …

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise

V Peona, MPK Blom, L Xu, R Burri… - Molecular ecology …, 2021 - Wiley Online Library
Genome assemblies are currently being produced at an impressive rate by consortia and
individual laboratories. The low costs and increasing efficiency of sequencing technologies …