Functional coordination between transcription factor clustering and gene activity
K Kawasaki, T Fukaya - Molecular Cell, 2023 - cell.com
The prevailing view of metazoan gene regulation is that transcription is facilitated through
the formation of static activator complexes at distal regulatory regions. Here, we employed …
the formation of static activator complexes at distal regulatory regions. Here, we employed …
Regulatory landscape of enhancer-mediated transcriptional activation
K Kawasaki, T Fukaya - Trends in Cell Biology, 2024 - cell.com
Enhancers are noncoding regulatory elements that instruct spatial and temporal specificity of
gene transcription in response to a variety of intrinsic and extrinsic signals during …
gene transcription in response to a variety of intrinsic and extrinsic signals during …
Lola-I is a promoter pioneer factor that establishes de novo Pol II pausing during development
V Ramalingam, X Yu, BD Slaughter, JR Unruh… - Nature …, 2023 - nature.com
While the accessibility of enhancers is dynamically regulated during development,
promoters tend to be constitutively accessible and poised for activation by paused Pol II. By …
promoters tend to be constitutively accessible and poised for activation by paused Pol II. By …
[HTML][HTML] Recent approaches lead to a deeper understanding of diverse segmentation mechanisms in insects, with a focus on the pair-rule genes
K Reding, L Pick - Current Opinion in Insect Science, 2024 - Elsevier
Highlights•Technical innovations allow live imaging of transcriptional dynamics in
embryos.•Digging deeper brought new insights into Drosophila gene regulation and …
embryos.•Digging deeper brought new insights into Drosophila gene regulation and …
Unified bursting strategies in ectopic and endogenous even-skipped expression patterns
Transcription often occurs in bursts as gene promoters switch stochastically between active
and inactive states. Enhancers can dictate transcriptional activity in animal development …
and inactive states. Enhancers can dictate transcriptional activity in animal development …
Mutational scans reveal differential evolvability of Drosophila promoters and enhancers
Rapid enhancer and slow promoter evolution have been demonstrated through comparative
genomics. However, it is not clear how this information is encoded genetically and if this can …
genomics. However, it is not clear how this information is encoded genetically and if this can …
Dynamic interplay between non-coding enhancer transcription and gene activity in development
K Hamamoto, Y Umemura, S Makino… - Nature …, 2023 - nature.com
Non-coding transcription at the intergenic regulatory regions is a prevalent feature of
metazoan genomes, but its biological function remains uncertain. Here, we devise a live …
metazoan genomes, but its biological function remains uncertain. Here, we devise a live …
Transcriptional regulation of Znt family members znt4, znt5 and znt10 and their function in zinc transport in yellow catfish (Pelteobagrus fulvidraco)
LL Liu, CC Song, N Abu-Elala, XY Tan, T Zhao… - … et Biophysica Acta (BBA …, 2024 - Elsevier
The study characterized the transcriptionally regulatory mechanism and functions of three
zinc (Zn) transporters (znt4, znt5 and znt10) in Zn 2+ metabolism in yellow catfish …
zinc (Zn) transporters (znt4, znt5 and znt10) in Zn 2+ metabolism in yellow catfish …
A body map of super-enhancers and their function in pig
Y Yang, X Li, Z Meng, Y Liu, K Qian, M Chu… - Frontiers in Veterinary …, 2023 - frontiersin.org
Introduction Super-enhancers (SEs) are clusters of enhancers that act synergistically to drive
the high-level expression of genes involved in cell identity and function. Although SEs have …
the high-level expression of genes involved in cell identity and function. Although SEs have …
Unveiling dynamic enhancer–promoter interactions in Drosophila melanogaster
Proper enhancer–promoter interactions are essential to maintaining specific transcriptional
patterns and preventing ectopic gene expression. Drosophila is an ideal model organism to …
patterns and preventing ectopic gene expression. Drosophila is an ideal model organism to …