Polyploidy: an evolutionary and ecological force in stressful times

Y Van de Peer, TL Ashman, PS Soltis, DE Soltis - The Plant Cell, 2021 - academic.oup.com
Polyploidy has been hypothesized to be both an evolutionary dead-end and a source for
evolutionary innovation and species diversification. Although polyploid organisms …

Mechanism of salinity tolerance in plants: physiological, biochemical, and molecular characterization

B Gupta, B Huang - International journal of genomics, 2014 - Wiley Online Library
Salinity is a major abiotic stress limiting growth and productivity of plants in many areas of
the world due to increasing use of poor quality of water for irrigation and soil salinization …

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

CY Cheng, V Krishnakumar, AP Chan… - The Plant …, 2017 - Wiley Online Library
The flowering plant Arabidopsis thaliana is a dicot model organism for research in many
aspects of plant biology. A comprehensive annotation of its genome paves the way for …

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

B Wang, E Tseng, M Regulski, TA Clark, T Hon… - Nature …, 2016 - nature.com
Zea mays is an important genetic model for elucidating transcriptional networks.
Uncertainties about the complete structure of mRNA transcripts limit the progress of research …

An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for …

BJ Clavijo, L Venturini, C Schudoma… - Genome …, 2017 - genome.cshlp.org
Advances in genome sequencing and assembly technologies are generating many high-
quality genome sequences, but assemblies of large, repeat-rich polyploid genomes, such as …

Alternative splicing landscapes in Arabidopsis thaliana across tissues and stress conditions highlight major functional differences with animals

G Martín, Y Márquez, F Mantica, P Duque, M Irimia - Genome biology, 2021 - Springer
Background Alternative splicing (AS) is a widespread regulatory mechanism in multicellular
organisms. Numerous transcriptomic and single-gene studies in plants have investigated AS …

Complexity of the alternative splicing landscape in plants

ASN Reddy, Y Marquez, M Kalyna, A Barta - The Plant Cell, 2013 - academic.oup.com
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …

Engineering salinity tolerance in plants: progress and prospects

SH Wani, V Kumar, T Khare, R Guddimalli, M Parveda… - Planta, 2020 - Springer
Main conclusion There is a need to integrate conceptual framework based on the current
understanding of salt stress responses with different approaches for manipulating and …

Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

CPG Calixto, W Guo, AB James, NA Tzioutziou… - The Plant …, 2018 - academic.oup.com
Plants have adapted to tolerate and survive constantly changing environmental conditions
by reprogramming gene expression The dynamics of the contribution of alternative splicing …

Optimizing R ubisco and its regulation for greater resource use efficiency

E Carmo‐Silva, JC Scales, PJ Madgwick… - Plant, cell & …, 2015 - Wiley Online Library
Rubisco catalyses the carboxylation of ribulose‐1, 5‐bisphosphate (RuBP), enabling net
CO2 assimilation in photosynthesis. The properties and regulation of R ubisco are not …