Tara Oceans: towards global ocean ecosystems biology

S Sunagawa, SG Acinas, P Bork, C Bowler… - Nature Reviews …, 2020 - nature.com
A planetary-scale understanding of the ocean ecosystem, particularly in light of climate
change, is crucial. Here, we review the work of Tara Oceans, an international …

[HTML][HTML] Human health and ocean pollution

PJ Landrigan, JJ Stegeman, LE Fleming… - Annals of global …, 2020 - ncbi.nlm.nih.gov
Background: Pollution–unwanted waste released to air, water, and land by human activity–is
the largest environmental cause of disease in the world today. It is responsible for an …

Verrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan

A Sichert, CH Corzett, MS Schechter, F Unfried… - Nature …, 2020 - nature.com
Brown algae are important players in the global carbon cycle by fixing carbon dioxide into 1
Gt of biomass annually, yet the fate of fucoidan—their major cell wall polysaccharide …

Minimum information about a biosynthetic gene cluster

MH Medema, R Kottmann, P Yilmaz… - Nature chemical …, 2015 - nature.com
A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi
and plants are known to be encoded in biosynthetic gene clusters. Information about these …

Ultrafast and accurate 16S rRNA microbial community analysis using Kraken 2

J Lu, SL Salzberg - Microbiome, 2020 - Springer
Background For decades, 16S ribosomal RNA sequencing has been the primary means for
identifying the bacterial species present in a sample with unknown composition. One of the …

A strong link between marine microbial community composition and function challenges the idea of functional redundancy

PE Galand, O Pereira, C Hochart, JC Auguet… - The ISME …, 2018 - academic.oup.com
Marine microbes have tremendous diversity, but a fundamental question remains
unanswered: why are there so many microbial species in the sea? The idea of functional …

[HTML][HTML] Overview of integrative assessment of marine systems: the ecosystem approach in practice

A Borja, M Elliott, JH Andersen, T Berg… - Frontiers in Marine …, 2016 - frontiersin.org
Traditional and emerging human activities are increasingly putting pressures on marine
ecosystems and impacting their ability to sustain ecological and human communities. To …

The European nucleotide archive in 2019

C Amid, BTF Alako… - Nucleic acids …, 2020 - academic.oup.com
Abstract The European Nucleotide Archive (ENA, https://www. ebi. ac. uk/ena) at the
European Molecular Biology Laboratory's European Bioinformatics Institute provides open …

Phytoplankton in the Tara Ocean

JJ Pierella Karlusich, FM Ibarbalz… - Annual Review of …, 2020 - annualreviews.org
Photosynthesis evolved in the ocean more than 2 billion years ago and is now performed by
a wide range of evolutionarily distinct organisms, including both prokaryotes and …

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation

PL Buttigieg, E Pafilis, SE Lewis… - Journal of biomedical …, 2016 - Springer
Abstract Background The Environment Ontology (ENVO; http://www. environmentontology.
org/), first described in 2013, is a resource and research target for the semantically …